Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq921 91.5 1e-13 seq270 91.5 1e-13 seq2295 87.8 1e-12 >seq921 Length=705944 Score = 91.5 bits (100), Expect = 1e-13 Identities = 74/86 (86%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 115586 |||||||| |||||||||||||||| |||||||||||||| || || ||| |||||| Sbjct 561557 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACAGATGGAGCGATCAAAGGAA 561498 Query 115587 CCAAAACTGATATATTGAGCCATTCG 115612 ||| ||||||| || ||||||||||| Sbjct 561497 CCATAACTGATTTAATGAGCCATTCG 561472 Score = 91.5 bits (100), Expect = 1e-13 Identities = 74/86 (86%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 114389 |||||||| |||||||||||||||| |||||||||||||| || || ||| |||||| Sbjct 561557 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACAGATGGAGCGATCAAAGGAA 561498 Query 114390 CCAAAACTGATATATTGAGCCATTCG 114415 ||| ||||||| || ||||||||||| Sbjct 561497 CCATAACTGATTTAATGAGCCATTCG 561472 >seq270 Length=1587502 Score = 91.5 bits (100), Expect = 1e-13 Identities = 74/86 (86%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 115586 |||||||| |||||||||||||||| |||||||||||||| || || ||| |||||| Sbjct 282643 CATGTATTCGCTCTAGAATTACCACAGTTATCCAAGTAACAGATGGAGCGATCAAAGGAA 282584 Query 115587 CCAAAACTGATATATTGAGCCATTCG 115612 ||| ||||||| || ||||||||||| Sbjct 282583 CCATAACTGATTTAATGAGCCATTCG 282558 Score = 91.5 bits (100), Expect = 1e-13 Identities = 74/86 (86%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 114389 |||||||| |||||||||||||||| |||||||||||||| || || ||| |||||| Sbjct 282643 CATGTATTCGCTCTAGAATTACCACAGTTATCCAAGTAACAGATGGAGCGATCAAAGGAA 282584 Query 114390 CCAAAACTGATATATTGAGCCATTCG 114415 ||| ||||||| || ||||||||||| Sbjct 282583 CCATAACTGATTTAATGAGCCATTCG 282558 >seq2295 Length=178014 Score = 87.8 bits (96), Expect = 1e-12 Identities = 72/84 (86%), Gaps = 4/84 (5%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGA--GTAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| |||||||||||||| || | |||| |||||| Sbjct 148768 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACAGATGGAGCGATCAAAGGAA 148709 Query 115587 CCAAAACTGATATATTGAGCCATT 115610 ||| ||||||| || ||||||||| Sbjct 148708 CCATAACTGATTTAGTGAGCCATT 148685 Score = 87.8 bits (96), Expect = 1e-12 Identities = 72/84 (86%), Gaps = 4/84 (5%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGA--GTAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| |||||||||||||| || | |||| |||||| Sbjct 148768 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACAGATGGAGCGATCAAAGGAA 148709 Query 114390 CCAAAACTGATATATTGAGCCATT 114413 ||| ||||||| || ||||||||| Sbjct 148708 CCATAACTGATTTAGTGAGCCATT 148685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396940510280776