Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq13 120 7e-22 seq356 102 2e-16 seq286 93.3 1e-13 >seq13 Length=4293860 Score = 120 bits (132), Expect = 7e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | || | ||| || ||||| | ||| |||||| ||||| ||||| || | Sbjct 4013397 TCCACCCCTCAGACGAAGGACAAGATGCAAGGTGGATTCTTTCTGGATGTTATAATCTGA 4013456 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| ||||| || ||||| | ||||| || || |||||||| | ||| || | || Sbjct 4013457 GAGGGTGCGGCCATCTTCAAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGG 4013516 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| || || |||||||||||||| || || || || || || | ||| || | || || Sbjct 4013517 GATACCCTCCTTATCCTGGATTTTGGCCTTAACATTCTCGATGGTATCACTGGGCTCAAC 4013576 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || ||||| || || | ||||| || || || |||||| Sbjct 4013577 CTCCAGAGTAATGGTCTTTCCTGTTAAGGTCTTCACAAAGATTTGCATT 4013625 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || ||||| || || | || || || || ||||| ||||||||||| || ||| Sbjct 4014574 TCTTTCTGAATATTGTAATCAGAAAGTGTACGGCCATCTTCCAATTGTTTTCCAGCAAAG 4014633 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || | | ||| || | ||||||||||||||| || || ||||| || || || ||| Sbjct 4014634 ATTAATCTCTGCTGGTCAGGTGGGATTCCTTCTTTGTCTTGAATTTTAGCCTTGACATTT 4014693 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | ||| || || || ||||| |||||||| || || || || || Sbjct 4014694 TCAATGGTGTCACTTGGTTCGACCTCAAGAGTGATGGTCTTCCCAGTAAGTGTTTTCACA 4014753 Query 288463 AATATCTGCAT 288473 ||||| ||||| Sbjct 4014754 AATATTTGCAT 4014764 Score = 111 bits (122), Expect = 4e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | || | || || ||||| | ||| |||||| ||||| ||||| || | Sbjct 4013169 TCCACCTCTTAGACGGAGAACAAGATGGAGGGTGGATTCTTTCTGGATGTTATAATCTGA 4013228 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| ||||| || ||||| | ||||| || || || ||||| | ||| || | || Sbjct 4013229 GAGGGTGCGGCCATCTTCAAGCTGTTTACCGGCAAATATCAGCCTCTGCTGGTCAGGAGG 4013288 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| || || |||||||||||||| || || || || || || | ||| || | || || Sbjct 4013289 GATACCCTCCTTATCCTGGATTTTGGCCTTAACATTCTCGATGGTATCACTGGGCTCAAC 4013348 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || ||||| || || | ||||| || || || |||||| Sbjct 4013349 CTCCAGAGTAATGGTCTTTCCTGTTAAGGTCTTCACAAAGATTTGCATT 4013397 Score = 109 bits (120), Expect = 1e-18 Identities = 158/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 || || || || ||||| | ||| ||| ||||| || || ||||| | ||| ||||| Sbjct 4013863 AGCCTGAGGACAAGATGGAGGGTGGATTCCTTTTGAATGTTGTAGTCTGAGAGGGTGCGG 4013922 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCT 288372 || ||||| | ||||| || || || ||||| | ||| || |||||| || ||| Sbjct 4013923 CCATCTTCAAGCTGTTTACCGGCAAATATCAGCCTCTGCTGG---TCTGGGGGAATACCT 4013979 Query 288373 TCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGC 288432 ||||| || || ||||| || ||||| ||||| || | || || | || || || || Sbjct 4013980 TCTTTGTCTTGAATTTTGGCCTTCACATTTTCAATGGTGTCACTTGGCTCCACCTCCAGA 4014039 Query 288433 GTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || || |||| || || || |||||||||||| Sbjct 4014040 GTAATTGTTTTGCCAGTCAAGGTTTTTACAAATATCTGCATT 4014081 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/196 (71%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| ||||| ||||| || | | || || || ||||| | ||||||||||| || Sbjct 4012977 TTCTTTCTGGATGTTATAATCTGACAAGGTACGGCCATCTTCCAGCTGTTTTCCTGCAAA 4013036 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||||| | || || |||||| || |||||||| || || || || || ||||| Sbjct 4013037 GATCAGTCTTTGCTG---GTCTGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTCAC 4013093 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| || | || || | || ||||| || ||||| || || || |||| || || Sbjct 4013094 ATTTTCAATGGTGTCACTTGGCTCCACTTCTAGGGTGATTGTTTTTCCAGTCAAGGTTTT 4013153 Query 288459 GACGAATATCTGCATT 288474 || || || |||||| Sbjct 4013154 TACAAAGATTTGCATT 4013169 >seq356 Length=1361660 Score = 102 bits (112), Expect = 2e-16 Identities = 140/196 (71%), Gaps = 5/196 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| ||||| | ||||| | ||| ||||| | ||||| || || ||| Sbjct 965252 TCCTTCTGGATATTGTAGTCTGACAGCGTACATCCATCTTCAAGGTGTTTGCCAGCAAAG 965193 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||| ||| || | || || ||||| | ||||||||||| | || || ||| Sbjct 965192 ATCAGACCCTGCTGGTCAGGAGGAATACCTTCCCTGTCCTGGATTTTGTCCTTAACATTT 965133 Query 288403 TCTATAGAATCGCTCGATT-----CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCT 288457 || || ||||| | || | || || |||||||| || ||||| || || || | Sbjct 965132 TCGATCATGTCGCTGGGTTCAACACAACCTCTAGCGTGATTGTTTTCCCAGTAAGGGTTT 965073 Query 288458 TGACGAATATCTGCAT 288473 | ||||| |||||||| Sbjct 965072 TTACGAAGATCTGCAT 965057 >seq286 Length=1547324 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| || ||||||||||| || || || ||||| |||| ||||| | |||||| || Sbjct 1044528 CCTTCCTTGTCCTGGATTTTGGCCTTAACATTTTCAATAGTGTCGCTGGGTTCTACCTCT 1044469 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||| || ||||| || || || || ||||| |||||||| Sbjct 1044468 AGCGTGATTGTTTTCCCAGTAAGGGTTTTTACGAAGATCTGCAT 1044425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179273700457464