Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq13 114 1e-20 seq3383 82.4 8e-11 >seq13 Length=4293860 Score = 114 bits (126), Expect = 1e-20 Identities = 144/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||||||||||||||| | || || || || || |||||||||| | Sbjct 4013887 GATTCCTTTTGAATGTTGTAGTCTGAGAGGGTGCGGCCATCTTCAAGCTGTTTACCGGCA 4013946 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 | || || | ||| ||||| || || |||||||||||||| ||| |||| | || | Sbjct 4013947 AATATCAGCCTCTGCTGGTCTGGGGGAATACCTTCTTTGTC-TTGAATTTTGGCCTTCAC 4014005 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | ||| | |||||| | | ||||||||| | || | ||||| ||||||| ||||| Sbjct 4014006 ATTTTCAATGGTGTCACTTGGCTCCACCTCCAGAGTAATTGTTTTGCCAGTCAAGGTTTT 4014065 Query 138600 TACAAAAATCTGCAT 138614 |||||| |||||||| Sbjct 4014066 TACAAATATCTGCAT 4014080 Score = 102 bits (112), Expect = 8e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| | |||||||||||| || | | ||||||| || ||||| ||||| || Sbjct 4014538 CCACCTCTAAGACGCAAAACTAAGTGCAAGGTTGACTCTTTCTGAATATTGTAATCAGAA 4014597 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || | |||||| || | | |||||| | ||| ||||| || || Sbjct 4014598 AGTGTACGGCCATCTTCCAATTGTTTTCCAGCAAAGATTAATCTCTGCTGGTCAGGTGGG 4014657 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| |||| | || | | ||| | |||||| | | || || Sbjct 4014658 ATTCCTTCTTTGTC-TTGAATTTTAGCCTTGACATTTTCAATGGTGTCACTTGGTTCGAC 4014716 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616 ||| | || | || || ||||| || ||||| ||||| || ||||||| Sbjct 4014717 CTCAAGAGTGATGGTCTTCCCAGTAAGTGTTTTCACAAATATTTGCATGG 4014766 Score = 100 bits (110), Expect = 3e-16 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || || | ||| || || | | || |||||||| ||||||||||| | Sbjct 4014082 CCACCTCTTAAGCGAAGAACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTC--TG 4014139 Query 138448 ATAGTACGCGAG--TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | || |||| || || || |||||||||| | | || || | ||| ||||| || | Sbjct 4014140 AGAGGGTGCGACCATCTTCAAGCTGTTTACCGGCAAATATCAGCCTCTGCTGGTCTGGGG 4014199 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564 | |||||||||||||| ||| |||| | || | | || | ||||| | | |||| Sbjct 4014200 GAATACCTTCTTTGTC-TTGAATTTTGGCCTTCACATTCTCAATTGTGTCACTTGGCTCC 4014258 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| | || | ||||| ||||| || || || |||||||||||||| Sbjct 4014259 ACCTCCAGAGTAATTGTTTTGCCAGTGAGGGTCTTCACAAAAATCTGCAT 4014308 >seq3383 Length=54064 Score = 82.4 bits (90), Expect = 8e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699 |||||| ||| ||||| | || ||||||||||| |||||| ||| | || ||||| | Sbjct 36659 TGTACTCCACAATCTCTGTACACAGGTTGCTGCACTTTATGGTGCCGAGGTTCTGCTGGT 36600 Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGG 153739 |||| ||||| || || ||||||||| | | |||||| || Sbjct 36599 TGCTCTTGCGGTTACAGGCGTCTTTGTATAACATGTAAGG 36560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496106151783360