Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq13 95.1 1e-14 seq293 93.3 4e-14 seq356 91.5 1e-13 >seq13 Length=4293860 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| | | ||||| || || || | || |||||||| |||||||||||||| Sbjct 4014537 TCCACCTCTAAGACGCAAAACTAAGTGCAAGGTTGACTCTTTCTGAATATTGTAATCAGA 4014596 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || || ||| || | ||||||||||| |||| |||| |||||| || || || Sbjct 4014597 AAGTGTACGGCCATCTTCCAATTGTTTTCCAGCAAAGATTAATCTCTGCTGGTCAGGTGG 4014656 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || ||||| ||||| ||||| | ||| | |||||| | ||||| Sbjct 4014657 GATTCCTTCTTTGTCTTGAATTTTAGCCTTGACATTTTCAATGGTGTCACTTGGTTCGAC 4014716 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 || | || | || || || || || ||||| ||||| || ||||||| Sbjct 4014717 CTCAAGAGTGATGGTCTTCCCAGTAAGTGTTTTCACAAATATTTGCATGG 4014766 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| ||||| || || || ||||| || || || ||| || ||||||||||| Sbjct 4012972 GTAGATTCTTTCTGGATGTTATAATCTGACAAGGTACGGCCATCTTCCAGCTGTTTTCCT 4013031 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| || ||||| || || || || || || ||||| || || ||| Sbjct 4013032 GCAAAGATCAGTCTTTGCTGGTCTGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTC 4013091 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | |||||| | ||| ||||| | ||| | ||||| || |||| ||| Sbjct 4013092 ACATTTTCAATGGTGTCACTTGGCTCCACTTCTAGGGTGATTGTTTTTCCAGTCAAGGTT 4013151 Query 127097 TTTACAAAAATCTGCAT 127113 |||||||| || ||||| Sbjct 4013152 TTTACAAAGATTTGCAT 4013168 >seq293 Length=1515377 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| ||||| || || ||||| || | ||||| ||| || |||||||| ||| Sbjct 420581 GTAGATTCTTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCATCTTCCAGCTGTTTGCCA 420522 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TT 127035 || |||||||||||||||| || || || || ||||| ||||| ||| || ||| || Sbjct 420521 GCAAAGATCAATCGCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGGATCTT-TGCTTT 420463 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 || | || | ||||| | ||| || || | ||| | || ||||| || || || Sbjct 420462 GACATTCTCAATAGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCTGTGAGGGT 420403 Query 127096 TTTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 420402 CTTCACAAAGATCTGCAT 420385 >seq356 Length=1361660 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/218 (70%), Gaps = 5/218 (2%) Strand=Plus/Minus Query 126902 AACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCG 126961 ||||||||||| | || ||||| || || |||||||| || || ||| | ||| Sbjct 965273 AACACCAAATGCAAGGTTGACTCCTTCTGGATATTGTAGTCTGACAGCGTACATCCATCT 965214 Query 126962 TCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCC 127021 || || ||||| ||||| |||||| | |||||| || ||||| || || ||| ||||| Sbjct 965213 TCAAGGTGTTTGCCAGCAAAGATCAGACCCTGCTGGTCAGGAGGAATACCTTCCCTGTCC 965154 Query 127022 GTGATTTTCTGCTTGAGTTGTTCGACGGTGTC----CGTAC-TCTCGACTTCGACGGTCA 127076 |||||| | ||| | | ||||| |||| || | | | || || | || | Sbjct 965153 TGGATTTTGTCCTTAACATTTTCGATCATGTCGCTGGGTTCAACACAACCTCTAGCGTGA 965094 Query 127077 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||||| || || || |||||||| || ||||||||| Sbjct 965093 TTGTTTTCCCAGTAAGGGTTTTTACGAAGATCTGCATG 965056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475351088573120