Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq13 114 1e-20 seq293 86.0 6e-12 >seq13 Length=4293860 Score = 114 bits (126), Expect = 1e-20 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGAC--GGTTTTAGAATCGT 45189 || || ||||| || ||||| || ||||| |||||||| |||| ||| ||| | Sbjct 4012960 ACAAGGTGCAGAGTAGATTCTTTCTGGATGTTATAATC--TGACAAGGTACGGCCATCTT 4013017 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 ||| ||||||||||| | |||| || ||||||||| || ||||| |||||||| |||| Sbjct 4013018 CCAGCTGTTTTCCTGCAAAGATCAGTCTTTGCTGGTCTGGGGGAATACCTTCTTTGTCTT 4013077 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 |||| || || | ||| | |||||| | ||| ||||| || || | |||| Sbjct 4013078 GAATCTTGGCCTTCACATTTTCAATGGTGTCACTTGGCTCCACTTCTAGGGTGATTGTTT 4013137 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || | ||||||||||| |||||||| Sbjct 4013138 TTCCAGTCAAGGTTTTTACAAAGATTTGCAT 4013168 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||||| || ||||| || ||||| |||||||| | ||| | ||| ||| Sbjct 4013644 ACAAGATGCAAGGTGGATTCTTTCTGGATGTTATAATCTGATAGGGTGCGACCATCTTCC 4013703 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||||| || || | ||||||| |||||| || || ||||| |||||||| |||||| Sbjct 4013704 AGCTGTTTCCCGGCAAAAATCAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCTTGA 4013763 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| || | || | ||||| | ||| || || ||||||| |||||| Sbjct 4013764 ATTTTGGCCTTCACATTCTCAATTGTGTCACTTGGCTCCACCTCCAGAGTAATTGTTTTG 4013823 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || || ||||| ||||||||| Sbjct 4013824 CCAGTGAGGGTCTTCACAAATATTTGCATC 4013853 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||||| | || ||||| || || ||||||||||| || || || || Sbjct 4013851 ATCCCTCCTCTCAGCCTGAGGACAAGATGGAGGGTGGATTCCTTTTGAATGTTGTAGTCT 4013910 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| || | ||||| || || |||||| | |||||||| || Sbjct 4013911 GAGAGGGTGCGGCCATCTTCAAGCTGTTTACCGGCAAATATCAGCCTCTGCTGGTCTGGG 4013970 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| |||||||| ||||||||||| || | ||| | |||||| | ||| Sbjct 4013971 GGAATACCTTCTTTGTCTTGAATTTTGGCCTTCACATTTTCAATGGTGTCACTTGGCTCC 4014030 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||||| |||||||| || | ||||||||||| || ||||| Sbjct 4014031 ACCTCCAGAGTAATTGTTTTGCCAGTCAAGGTTTTTACAAATATCTGCAT 4014080 Score = 107 bits (118), Expect = 2e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || | || | ||| |||| |||| ||||| || || || ||||| ||||| Sbjct 4014535 ATTCCACCTCTAAGACGCAAAACTAAGTGCAAGGTTGACTCTTTCTGAATATTGTAATCA 4014594 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 || || | | ||| |||||||||||||| || | || |||| |||||||| | Sbjct 4014595 --GAAAGTGTACGGCCATCTTCCAATTGTTTTCCAGCAAAGATTAATCTCTGCTGGTCAG 4014652 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | || || |||||||| ||||||||||| |||| ||| | |||||| | | Sbjct 4014653 GTGGGATTCCTTCTTTGTCTTGAATTTTAGCCTTGACATTTTCAATGGTGTCACTTGGTT 4014712 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || ||||| | || || || || || ||||| ||||| |||||||| Sbjct 4014713 CGACCTCAAGAGTGATGGTCTTCCCAGTAAGTGTTTTCACAAATATTTGCAT 4014764 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||||||||| || || || || ||| | ||| || | ||| Sbjct 4014106 TGGAGAGTGGATTCCTTTTGGATGTTGTAGTCTGAGAGGGTGCGACCATCTTCAAGCTGT 4014165 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || |||||| | |||||||| || ||||| |||||||| ||||||||||| Sbjct 4014166 TTACCGGCAAATATCAGCCTCTGCTGGTCTGGGGGAATACCTTCTTTGTCTTGAATTTTG 4014225 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || | || | ||||| | ||| || || ||||||| |||||||| || Sbjct 4014226 GCCTTCACATTCTCAATTGTGTCACTTGGCTCCACCTCCAGAGTAATTGTTTTGCCAGTG 4014285 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || |||||||| ||||| Sbjct 4014286 AGGGTCTTCACAAAAATCTGCAT 4014308 >seq293 Length=1515377 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || ||||| || ||||| || || || | ||| ||| ||| Sbjct 419909 ACAAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCC 419850 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || || | ||||||| |||||||| || || ||||| ||||||||||| Sbjct 419849 AGCTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGTGGGATGCCCTCTTTATCTTGT 419790 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || ||| | || | ||||| || | || || || || |||| || || Sbjct 419789 ATCTTACATTTCACATTGTCAATAGTGTCAGATGCTTCCACCTCCAGGGTAATGGTCTTT 419730 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATCGC 45343 || ||||||||||| ||||| || ||||| || Sbjct 419729 CCAGTTAGAGTTTTCACAAAGATCTGCATGGC 419698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451860886792480