Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq81 140 5e-28 seq1540 120 4e-22 >seq81 Length=2592809 Score = 140 bits (154), Expect = 5e-28 Identities = 163/220 (74%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 8930 ATGGTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAG 8989 |||| ||||| || || |||| || || ||||| ||||||||||| || |||||| Sbjct 1420532 ATGGAGGCGGTCTTTACCATGTTGAAGCCCGTCTCCCCCCCGAAGGTGCTCGGCTTCCAG 1420473 Query 8990 TACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGC 9049 ||| |||||||||||||| |||| ||||||| ||||| | ||| || || || |||| | Sbjct 1420472 TACTCCGGGGAGCAGATGGGGTTCCCCATGAGTCCTTTGAGGGAGAAGGGGGCTCCCATC 1420413 Query 9050 TCGATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTG 9109 ||||| |||||||| |||||||||| ||| | | ||| || | | || ||| | | Sbjct 1420412 TCGATCATGCTCTCCCCGAAGATGGAGTTGGGGTGGGTTTTCTCCAGCAGGAGGCCCGGG 1420353 Query 9110 TAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCA 9149 |||| || | || |||| |||||| || || | |||| Sbjct 1420352 TAGAACTCCAGGGCGTCGATGTCGCCGTACAGCTCCTCCA 1420313 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 9736 GTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAG 9795 |||||||| || | ||||||||| ||||| |||||||| | || || || |||||| Sbjct 1411476 GTGGTTTGGAAGAGCTGCTCGTCCCCCCACGTGGGGTGTTCCTCCTTCAGGACGTCGCAG 1411417 Query 9796 ACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCA 9855 |||| |||||| || | ||||| | |||||||||||||| | || || | | ||| Sbjct 1411416 ACCCGGTTGTGCTCGCGGAGCCAAAGCGTGGCGTACATCATCAGTCCGGGGAGGAGCCCA 1411357 Query 9856 AACACTTCATTCCCCA 9871 ||||| || | ||||| Sbjct 1411356 AACACCTCCTGCCCCA 1411341 >seq1540 Length=380051 Score = 120 bits (132), Expect = 4e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 8966 CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCT 9025 ||||| || ||||| ||||||||||| | || ||||| || ||| |||| || ||| Sbjct 251584 CCGCCAAATGTGCTAGGTTTCCAGTATTCAGGAGAGCAAATTGGGTTTCCCATAAGGCCT 251525 Query 9026 TTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGC 9085 ||||| ||||||||||| || | || | ||| |||| || || ||||| || ||||| Sbjct 251524 TTCAATGAAAACGGAGCACCAATTTCAACCATGGTCTCTCCAAATATGGCCCCAGGACGG 251465 Query 9086 GGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCT 9145 ||| ||| || | | || | ||||| ||| ||||| || | ||| ||||| || || Sbjct 251464 GGTCGTTCCACCAAAAGACCTGGGTAGAATTCTACAGCATCAATGTCTCCATATAGTTCT 251405 Query 9146 TCCAACTCGGCAGCTATCTCCTTCTCACCTACAA 9179 || | || |||| || ||||| || |||| || Sbjct 251404 TCAAGTTCTGCAGATAATTCCTTTTCTCCTATAA 251371 Score = 111 bits (122), Expect = 2e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 9754 TCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACCCTGTTGTGTTCTCTC 9813 || ||| |||| || ||||| || || | || | ||| ||||| | ||||||||| ||| Sbjct 247856 TCATCATCCCACTCAGGGTGCTCCTGCATCAGTATATCACAGACGCGGTTGTGTTCCCTC 247797 Query 9814 AGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAACACTTCATTCCCCACT 9873 ||||||||| | | |||||||| || || || || | ||||| || || | || ||| Sbjct 247796 AGCCATATGATAGAATACATCATCAACCCTGGTACAAGGCCAAAAACCTCCTGTCCAACT 247737 Query 9874 GCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGCACCTGGGTCTCTTTG 9933 ||||| || |||| || |||| | || | || ||||| | ||| || || || Sbjct 247736 GCAAATCGAAGATGTTCTGGCATATGTGGTGGGTAAAGCATTTCAACCCCTGTGTCATTC 247677 Query 9934 ACGGTGGGGGGATACATTTCACCGTCAATAACCT 9967 || || || || ||||| ||||| ||||||| || Sbjct 247676 ACTGTTGGAGGGTACATCTCACCATCAATAATCT 247643 Score = 96.9 bits (106), Expect = 5e-15 Identities = 123/168 (73%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 ||||||||||||||| | | || | ||||| || | ||||| | || ||| |||| Sbjct 247341 TCTTACCCCATGCCCAAGTGCTTTAGTGAAGGCAGCTCCTCTTTTGGTGTCAGTCTTAAA 247282 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 |||||||||||||||||||| | || || || ||||||| ||||| ||||| || || Sbjct 247281 GAATTGGTGTGTAAAGTGTTGGGCAAAGAATGCAAACATCATATTGGTTCCCTGTGGGTC 247222 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGA 10288 ||||| || | || | || || | ||| || |||| | || |||| Sbjct 247221 AGGGATGAACTTTCTTCTAAGTAACAATTTCTCTACAACCAGT-TTGA 247175 Score = 89.7 bits (98), Expect = 7e-13 Identities = 126/175 (72%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 9547 AAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGG 9606 ||| |||| ||||| |||| |||||| | || || || |||||||| || || ||||| Sbjct 249167 AAAGCATCTGGCAATAGAGGATGCCAATGATATAGTGTGTTGAACTCAGCAGCAATTCGA 249108 Query 9607 TTCTGGTACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGT 9664 ||||||||||| || ||| ||||| ||||| |||||||| | || | || | Sbjct 249107 TTCTGGTACTGGAATCTCTGGT--TGAACAACAACTCTGGGTCAAATTTCAGTTTAAAAT 249050 Query 9665 GGTACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 | || || || || ||||| ||||| | | || | ||| || |||||||| || Sbjct 249049 GATAACCACTCAGGTGCTGCACATAATCTTCAATGACAATTTTGATGGTTTCACC 248995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723500134239200