Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1242 165 3e-35 seq470 131 7e-25 seq13 122 3e-22 seq166 96.9 1e-14 seq356 89.7 2e-12 seq2952 84.2 9e-11 >seq1242 Length=518156 Score = 165 bits (182), Expect = 3e-35 Identities = 275/392 (70%), Gaps = 9/392 (2%) Strand=Plus/Plus Query 451217 TATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAA 451276 || ||||| ||| || || ||||| ||||| |||||||| || ||||| ||| || || Sbjct 180 TACAAAGGAGAAGAAAAGACCTTTGCACCTGAGGAAATTTCCTCCATGGT-CTTGCTGAA 238 Query 451277 -ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGT 451335 ||||| |||||||| ||| | | | ||| ||| || | | || || || || || Sbjct 239 GATGAAGGAAACAGCTGAAGCGTTTCTGGGTCATCCCGTGAGAAACGCTGTGATCACCGT 298 Query 451336 TCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGG 451395 ||||| ||||||||||| |||| || ||||| ||||||||||| || || ||||| Sbjct 299 GCCCGCCTATTTCAATGACTCACAGCGCCAAGCCACTAAAGATGCCGGGGTCATAGCTGG 358 Query 451396 TTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGG 451455 ||||||||| || |||| |||||||| || ||||| ||||| | || || || || || Sbjct 359 TTTAAATGTGCTGAGAATCATTAATGAGCCCACAGCTGCTGCCATTGCTTACGG-CTTGG 417 Query 451456 AAAATCAAAAGAAAC--AGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACT 451513 | ||| ||| | || ||| || || | | ||||| | || || || || Sbjct 418 A----TAAAGGAAGCCGAGGTGAACGCAACATACTGATCTTTGACCTGGGAGGTGGCACG 473 Query 451514 CATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGT 451573 |||| || | || | ||||| || || || ||||| || ||||| || ||| Sbjct 474 TTTGATGTCTCCATCCTCACTATTGATGACGGAGTCTTTGAGGTGAAGGCCACAGCGGGT 533 Query 451574 GATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || |||||||| || || ||||| ||||||| Sbjct 534 GACACTCATCTGGGTGGAGAAGACTTTGATAA 565 >seq470 Length=1166527 Score = 131 bits (144), Expect = 7e-25 Identities = 455/702 (65%), Gaps = 15/702 (2%) Strand=Plus/Minus Query 450910 AGTAGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGG 450969 ||| || || || ||||| || || ||||||| || ||||| || |||| ||| |||| Sbjct 643235 AGTGGCCATCGGCATTGACCTGGGCACCACCTACTCCTGTGTGGGGGTTTTCCAGCATGG 643176 Query 450970 AAATGTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGT-- 451027 || || || || || || || ||||| || || || || || || | || || Sbjct 643175 CAAGGTGGAGATAATCGCCAACGACCAGGGGAACCGCACCACCCC--CA--GCTACGTGG 643120 Query 451028 --TTTACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA-ATCAATGGTAAATTCAAAT 451084 ||||| || | || || || | || | ||||| || | | | ||| | || Sbjct 643119 CCTTTACTGACACCGAGAGGCTGATGGGAGATGCTGCCAAGAACCA-GGTGGCTCTCAAC 643061 Query 451085 GCCAAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACT 451144 || | ||||| || | |||||| || | | |||||| | | | ||||||| || Sbjct 643060 CCCCAGAACACCGTCTTTGATGCCAAGAGGCTGATTGGCAGGAACTTTGATGATCATGTG 643001 Query 451145 GTACAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTAT 451204 || || || | || || | | | || || | | || |||||||||| | Sbjct 643000 GTGCAGTCTGACATGAAGCACTGGCCCTTCCAGGTGGTGAGTGAAGGAGGAAAGCCCAAG 642941 Query 451205 ATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATG 451264 | |||| |||||||||| || | || ||||| ||| || || || || |||||| Sbjct 642940 GTCAAAGTGGATTATAAAGGAGAGATGAAGACTTTCTGTCCGGAGGAGATCTCCTCTATG 642881 Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 ||||| || ||||| || |||||||| || | || ||||| || |||| Sbjct 642880 GTTCTGCTGAAGATGAAGGAGACAGCAGAGGCGTACCTGGGCCACCCAGTCACCAATGCC 642821 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || || || || || || || |||||||| | || || || || || || ||||| || Sbjct 642820 GTCATCACCGTCCCAGCCTACTTCAATGACTCTCAGCGCCAGGCTACCAAGGATGCCGGG 642761 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 |||||||| | ||||| || |||| || ||||| || |||||||| || | || Sbjct 642760 GTCATTGCTGGACTCAATGTGCTGAGAATCATCAATGAGCCAACAGCAGCAGCCATCGCC 642701 Query 451445 TATGGACTAGGAAAATCAAAAGAAAC-AGAAGaaaaaaaTATTTTAGTATTTGATTTTGG 451503 || || || ||| | || || | | |||| || ||| | | || || |||| Sbjct 642700 TACGGCCT-GGACA---AAGGGAGTCGCGGAGAACGCAACATTCTCATCTTCGACCTTGG 642645 Query 451504 TGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGC 451563 || || || ||| || | || | ||||| || || | ||||| |||||||| Sbjct 642644 AGGTGGCACCTTCGATGTCTCCATCCTCACCATTGATGACGGCATCTTTGAGGTAAAGGC 642585 Query 451564 AACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || ||||| ||||||||||| || || || ||||||| Sbjct 642584 CACAGCAGGTGACACTCATCTAGGTGGGGAGGACTTTGATAA 642543 >seq13 Length=4293860 Score = 122 bits (134), Expect = 3e-22 Identities = 160/221 (72%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 391053 AATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGAT 391112 ||||||| || |||||||| ||||| || || || |||||||| || ||| || ||| Sbjct 4014759 AATATTT--GTGAAAACACTTACTGGGAAGACCATCACTCTTGAGGTCGAACCAAGTGAC 4014702 Query 391113 AACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAA 391172 | ||||||| | | || ||||||||||| || |||||||| || ||||| || || Sbjct 4014701 ACCATTGAAAATGTCAAGGCTAAAATTCAAGACAAAGAAGGAATCCCACCTGACCAGCAG 4014642 Query 391173 CGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATT 391232 | ||||| || | || |||||| | |||||||| | || | | ||||| |||||| Sbjct 4014641 AGATTAATCTTTGCTGGAAAACAATTGGAAGATGGCCGTACACTTTCTGATTACAATATT 4014582 Query 391233 GATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 | || || |||| | |||||||| || | || ||||| Sbjct 4014581 CAGAAAGAGTCAACCTTGCACTTAGTTTTGCGTCTTAGAGG 4014541 Score = 100 bits (110), Expect = 1e-15 Identities = 130/179 (73%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 391053 AATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGAT 391112 ||||||| || || || || ||||| ||||| |||||||| || || || || ||| Sbjct 4013847 AATATTT--GTGAAGACCCTCACTGGCAAAACAATTACTCTGGAGGTGGAGCCAAGTGAC 4013790 Query 391113 AACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAA 391172 | ||||| | | || ||||||||||| || ||||| |||||||| ||||| ||| Sbjct 4013789 ACAATTGAGAATGTGAAGGCCAAAATTCAAGACAAAGAAGGTATTCCTCCAGATCAGCAA 4013730 Query 391173 CGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATAT 391231 | || ||||| | |||||||| || |||||||| | || | | |||||||| || Sbjct 4013729 AGATTGATTTTTGCCGGGAAACAGCTGGAAGATGGTCGCACCCTATCAGATTATAACAT 4013671 Score = 96.9 bits (106), Expect = 1e-14 Identities = 157/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || ||||| ||||||| ||||| |||||||| || || || || Sbjct 4014081 AATGCAGATATTTGTAAAAACCTTGACTGGCAAAACAATTACTCTGGAGGTGGAGCCAAG 4014022 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| | ||||||| | | || ||||||||||| || ||||| ||||| || || || Sbjct 4014021 TGACACCATTGAAAATGTGAAGGCCAAAATTCAAGACAAAGAAGGTATTCCCCCAGACCA 4013962 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || | | || || | || ||||| ||||||||||| | || | | || || || Sbjct 4013961 GCAGAGGCTGATATTTGCCGGTAAACAGCTTGAAGATGGCCGCACCCTCTCAGACTACAA 4013902 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 ||| | ||||| | || || || | || | || ||||||||| Sbjct 4013901 CATTCAAAAGGAATCCACCCTCCATCTTGTCCTCAGGCTGAGAGGA 4013856 >seq166 Length=2004940 Score = 96.9 bits (106), Expect = 1e-14 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 ||||||| | ||||| || ||||| ||||||||| | || |||| ||||||||||||| Sbjct 1622069 ATGCAGTGGTCACTGTCCCAGCTTACTTCAATGATTCCCAGAGGCAGGCAACTAAAGATG 1622010 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | ||| || |||||| | || || || || || || ||||| || || ||||| || Sbjct 1622009 CTGGAACCATCGCTGGTCTCAACGTCCTCCGTATCATCAATGAGCCAACTGCAGCAGCCA 1621950 Query 451440 TAGCATATGGACT 451452 |||| ||||| || Sbjct 1621949 TAGCTTATGGTCT 1621937 Score = 87.8 bits (96), Expect = 7e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 450913 AGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAA 450972 |||| | || || ||||| || ||||||| ||||| |||||||| | ||| ||||||| Sbjct 1625074 AGCAGTAGGCATCGATCTAGGCACCACCTACTCATGCGTAGGTGTGTTCCAGCATGGAAA 1625015 Query 450973 TGTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTAC 451032 || || ||||| || |||||||||||| || || ||||| | || ||||| Sbjct 1625014 AGTGGAGATTATTGCCAATGACCAAGGAAACCGTACCACTCCAAGCTATGTGGCCTTTAC 1624955 Query 451033 GGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA 451065 || ||||||||||| | ||| | || || || Sbjct 1624954 AGACACAGAAAGACTTATTGGGGATGCCGCAAA 1624922 >seq356 Length=1361660 Score = 89.7 bits (98), Expect = 2e-12 Identities = 141/202 (70%), Gaps = 5/202 (2%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGA-----TGTTGAAT 391104 ||| | || ||||| ||||| || ||||| ||||| || || || || ||||||| Sbjct 965057 ATGCAGATCTTCGTAAAAACCCTTACTGGGAAAACAATCACGCTAGAGGTTGTGTTGAAC 965116 Query 391105 CATCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTG 391164 | || | || ||| | |||| | ||||| || || | |||||| |||||||||| Sbjct 965117 CCAGCGACATGATCGAAAATGTTAAGGACAAAATCCAGGACAGGGAAGGTATTCCTCCTG 965176 Query 391165 ATCAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATT 391224 | || || || | || || | || ||||| |||||||||||| | || || | || | Sbjct 965177 ACCAGCAGGGTCTGATCTTTGCTGGCAAACACCTTGAAGATGGATGTACGCTGTCAGACT 965236 Query 391225 ATAATATTGATAAGGATGCAAC 391246 | ||||| | ||||| |||| Sbjct 965237 ACAATATCCAGAAGGAGTCAAC 965258 >seq2952 Length=87637 Score = 84.2 bits (92), Expect = 9e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 ||||| |||||||| || || |||||||| || |||||| | ||| | ||||||||||| Sbjct 16195 GCAACAAAAGATGCTGGGCAGATTGCTGGATTGAATGTTTTGCGAGTAATTAATGAACCA 16136 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCA 451462 || || ||||| || || ||||| |||| || ||| Sbjct 16135 ACTGCTGCTGCCCTTGCTTATGGCCTAGATAAGTCA 16100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975080793688304