Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq16 111 2e-19 seq67 109 6e-19 seq425 98.7 1e-15 seq935 82.4 9e-11 >seq16 Length=4132212 Score = 111 bits (122), Expect = 2e-19 Identities = 113/146 (77%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 18974 AATGTAGTC-CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGT 19032 |||| ||| ||||||||| || || | ||||| || || || | ||| |||||||| Sbjct 2457830 AATGAAGTTACCTCGTCTCGGCTGATGAGCTCATTGGAGAAGGTGAGACCGGGCATCAGA 2457889 Query 19033 CCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACT 19092 ||||| || || |||||||| | || |||||| || ||||||||||| || |||||||| Sbjct 2457890 CCTCTCTTCTTCAACCAGAAAACAGCAGCAAAGGAGCCAGAAAAGAAGATTCCTTCTACC 2457949 Query 19093 GCTGCAAAAGCAACTAGTCTTTCTCC 19118 || ||||| || || | || |||||| Sbjct 2457950 GCGGCAAACGCCACCACTCGTTCTCC 2457975 >seq67 Length=2748889 Score = 109 bits (120), Expect = 6e-19 Identities = 203/298 (68%), Gaps = 5/298 (2%) Strand=Plus/Plus Query 19060 GCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCA 19119 |||||||| |||| | || || || || || || ||||| ||||| | | || | | Sbjct 1060388 GCAAATGACTCAGAGGAAAAGATTCCCTCCACAGCAGCAAATGCAACCACACACTCACTA 1060447 Query 19120 TAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACAT 19179 || | |||| || | | |||| | | |||| ||| |||||||||||||| ||||| Sbjct 1060448 TAGGTTGCATTGTTGTCACTAATCTAGCTGAGTGTCCATTCAGCCTTCTTTTTCACACAA 1060507 Query 19180 GGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACA-----T 19234 |||| || || || ||| || | || | | ||| | | |||||||| | | Sbjct 1060508 GGCAGAGTTTCAATTACATTGAACAAGAACTTCCTCTCCTTGGGATCTTTAAAACCCAGT 1060567 Query 19235 ATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATC 19294 ||| || |||| | || ||||| || | |||||| || ||||| || || ||||| | Sbjct 1060568 ATGTGTCAATCAGAAGGCTATACATCTCCGGATGAATGTTCTCTATTGCAATTTGAAAGC 1060627 Query 19295 CGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATT 19352 | || ||||| | |||||||| | |||||||| || || | ||| ||||| || Sbjct 1060628 CATAGAAACAGCACGCTTCTGTGACTTGTACTTCCTGACTGAAACGTTCAACCAAGTT 1060685 >seq425 Length=1236905 Score = 98.7 bits (108), Expect = 1e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | ||||||||| ||||| | ||||||||||| |||| || | Sbjct 157411 CCTCATCTCTGCTGATTAGTTCATTAGAGAATGTGAGACCAGGCATCAACCCTCGCTTCT 157470 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | |||||| || | |||||||||||||| || || || || || || || ||||| | Sbjct 157471 TCAGCCAGAAGATGGCTGCAAATGATCCAGAGAAAAAGATTCCCTCCACAGCAGCAAATG 157530 Query 19103 CAAC 19106 |||| Sbjct 157531 CAAC 157534 >seq935 Length=692996 Score = 82.4 bits (90), Expect = 9e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 136671 AATCTGTAGATAAAGCATTTAAAAAGTTTCCAAATGGAATATTTGCAGAAATAAAATATG 136730 |||||||||| | || | || || | |||||||||||| | |||||| ||||| |||| Sbjct 243097 AATCTGTAGAGTATGCTATGAAGAAATGTCCAAATGGAATGTATGCAGAGATAAAGTATG 243038 Query 136731 ACGGAGAACGTGTACAGGTTCACAAGAATGGAAACCACTT 136770 | |||||||| || ||||| ||||| || || | ||||| Sbjct 243037 ATGGAGAACGCGTCCAGGTGCACAAAAACGGTGATCACTT 242998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561931820044320