Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq293 125 1e-23 seq13 118 2e-21 >seq293 Length=1515377 Score = 125 bits (138), Expect = 1e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| | |||||||| || ||||| | || || |||| ||| Sbjct 419701 ATGCAGATCTTTGTGAAAACTCTAACTGGAAAGACCATTACCCTGGAGGTGGAAGCATCT 419760 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || |||||| ||| |||||||||||||| ||||| || ||||| || Sbjct 419761 GACACTATTGACAATGTGAAATGTAAGATACAAGATAAAGAGGGCATCCCACCAGACCAG 419820 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | |||||| |||||||| |||||| | | || | || || || || Sbjct 419821 CAGAGATTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTACAAC 419880 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || ||||| | || |||||| Sbjct 419881 ATCCAGAAAGAATCCACCCTTCAT 419904 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | |||| || |||||| ||| |||||||||||||| ||||| || ||||| || Sbjct 419988 TGACACTATTGACAATGTGAAATGTAAGATACAAGATAAAGAGGGCATCCCACCAGACCA 420047 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || |||||||| | |||||| |||||||| |||||| | | || | || || || || Sbjct 420048 GCAGAGATTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTACAA 420107 Query 156002 TATATCCAAAGAGGCGACGCTTCAT 156026 || ||||| | || |||||| Sbjct 420108 CATCCAGAAAGAATCCACCCTTCAT 420132 >seq13 Length=4293860 Score = 118 bits (130), Expect = 2e-21 Identities = 136/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | ||||| |||||||||||||| || || ||||||| || Sbjct 4013169 AATGCAAATCTTTGTAAAAACCTTGACTGGAAAAACAATCACCCTAGAAGTGGAGCCAAG 4013110 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | ||| ||| ||||| || || ||||| |||||||| || || ||||| || Sbjct 4013109 TGACACCATTGAAAATGTGAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCAGACCA 4013050 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||||| |||| | ||| || || ||||| |||||| | | || || ||||||||||| Sbjct 4013049 GCAAAGACTGATCTTTGCAGGAAAACAGCTGGAAGATGGCCGTACCTTGTCAGATTATAA 4012990 Query 156002 TAT 156004 || Sbjct 4012989 CAT 4012987 Score = 113 bits (124), Expect = 7e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || || | ||||| ||||| ||||| | || || || | Sbjct 4013852 ATGCAAATATTTGTGAAGACCCTCACTGGCAAAACAATTACTCTGGAGGTGGAGCCAAGT 4013793 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || ||||| ||||| ||||| |||||||| || |||||||| || Sbjct 4013792 GACACAATTGAGAATGTGAAGGCCAAAATTCAAGACAAAGAAGGTATTCCTCCAGATCAG 4013733 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| |||||| || ||||| |||||| | || ||||||||||||| Sbjct 4013732 CAAAGATTGATTTTTGCCGGGAAACAGCTGGAAGATGGTCGCACCCTATCAGATTATAAC 4013673 Query 156003 AT 156004 || Sbjct 4013672 AT 4013671 Score = 89.7 bits (98), Expect = 8e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | |||||| | ||||| || || || || | || |||||| | Sbjct 4014764 ATGCAAATATTTGTGAAAACACTTACTGGGAAGACCATCACTCTTGAGGTCGAACCAAGT 4014705 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || || |||||| ||||| |||||||| || || || || || Sbjct 4014704 GACACCATTGAAAATGTCAAGGCTAAAATTCAAGACAAAGAAGGAATCCCACCTGACCAG 4014645 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||||| || | ||| || || || | |||||| | | || | || ||||| ||| Sbjct 4014644 CAGAGATTAATCTTTGCTGGAAAACAATTGGAAGATGGCCGTACACTTTCTGATTACAAT 4014585 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || |||||| | || | || ||||| || Sbjct 4014584 ATTCAGAAAGAGTCAACCTTGCACTTAGTTTT 4014553 Score = 87.8 bits (96), Expect = 3e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || || || || ||||| || ||||| | || || || Sbjct 4014537 AATGCAAATCTTTGTGAAGACCTTAACAGGAAAGACCATTACTCTGGAGGTTGAGCCCAG 4014478 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | ||| || || || ||||| |||||||| || || || |||||||| || Sbjct 4014477 TGACACAATTGAGAATGTTAAGGCCAAAATCCAAGATAAGGAGGGTATCCCTCCAGATCA 4014418 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || |||| | ||| || || ||||| |||||| | | || | || ||||| || Sbjct 4014417 GCAGAGGCTGATCTTTGCTGGCAAACAGCTTGAAGATGGCCGTACCCTGTCTGATTACAA 4014358 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || ||||| | ||||| ||||||||||| Sbjct 4014357 CATCCAGAAAGAATCCACGCTGCATTTAGTGTT 4014325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731641570100800