Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq13 163 5e-35 seq293 122 2e-22 >seq13 Length=4293860 Score = 163 bits (180), Expect = 5e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||||||| || || ||||| || || || | |||||| |||||| ||||| Sbjct 4014535 ATTCCACCTCTAAGACGCAAAACTAAGTGCAAGGTTGACTCTTTCTGAATATTGTAATCA 4014594 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || ||||||||||| |||||||| ||||||||||| ||||||||| Sbjct 4014595 GAAAGTGTACGGCCATCTTCCAATTGTTTTCCAGCAAAGATTAATCTCTGCTGGTCAGGT 4014654 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| ||||| |||||| || ||||| || || || | ||| Sbjct 4014655 GGGATTCCTTCTTTGTCTTGAATTTTAGCCTTGACATTTTCAATGGTGTCACTTGGTTCG 4014714 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| ||||| || ||||| | |||||| | ||||| ||||| Sbjct 4014715 ACCTCAAGAGTGATGGTCTTCCCAGTAAGTGTTTTCACAAATATTTGCAT 4014764 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| || || || | || | ||| || || | ||||| || ||||||||| Sbjct 4013623 ATTCCACCCCTCAGACGAAGGACAAGATGCAAGGTGGATTCTTTCTGGATGTTATAATCT 4013682 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| | || | || |||| ||||| || |||||||| ||||| || || || || Sbjct 4013683 GATAGGGTGCGACCATCTTCCAGCTGTTTCCCGGCAAAAATCAATCTTTGCTGATCTGGA 4013742 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| ||||| || ||||| || || || | || Sbjct 4013743 GGAATACCTTCTTTGTCTTGAATTTTGGCCTTCACATTCTCAATTGTGTCACTTGGCTCC 4013802 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || |||||||| ||||| ||||| | || || | ||||| ||||| Sbjct 4013803 ACCTCCAGAGTAATTGTTTTGCCAGTGAGGGTCTTCACAAATATTTGCAT 4013852 Score = 89.7 bits (98), Expect = 9e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 171872 AGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACC 171931 ||||| ||||| || ||||||||||| || | || | || |||| ||||| || Sbjct 4012971 AGTAGATTCTTTCTGGATGTTATAATCTGACAAGGTACGGCCATCTTCCAGCTGTTTTCC 4013030 Query 171932 AGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTT 171991 ||||| || | ||| || ||||| || || || |||||||| ||||| || || || Sbjct 4013031 TGCAAAGATCAGTCTTTGCTGGTCTGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTT 4013090 Query 171992 TACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGT 172051 ||||| || || || | || |||||||| || || ||||| ||||| || || Sbjct 4013091 CACATTTTCAATGGTGTCACTTGGCTCCACTTCTAGGGTGATTGTTTTTCCAGTCAAGGT 4013150 Query 172052 TTTAATGAATATCTGCATT 172070 ||| | || || |||||| Sbjct 4013151 TTTTACAAAGATTTGCATT 4013169 Score = 89.7 bits (98), Expect = 9e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 |||||||| ||||| || | ||||| ||||| || || || |||||||| ||||| ||| Sbjct 4013935 TGTTTACCGGCAAATATCAGCCTCTGCTGGTCTGGGGGAATACCTTCTTTGTCTTGAATT 4013994 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || || ||||| || || || | || || || |||||||| ||||| ||| Sbjct 4013995 TTGGCCTTCACATTTTCAATGGTGTCACTTGGCTCCACCTCCAGAGTAATTGTTTTGCCA 4014054 Query 172044 GTTAATGTTTTAATGAATATCTGCATT 172070 || || ||||| | |||||||||||| Sbjct 4014055 GTCAAGGTTTTTACAAATATCTGCATT 4014081 Score = 87.8 bits (96), Expect = 3e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| || || | || | ||| | || | ||||| || ||||||||| Sbjct 4013167 ATTCCACCTCTTAGACGGAGAACAAGATGGAGGGTGGATTCTTTCTGGATGTTATAATCT 4013226 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || || | |||||||| ||||| || | ||||| |||||||| Sbjct 4013227 GAGAGGGTGCGGCCATCTTCAAGCTGTTTACCGGCAAATATCAGCCTCTGCTGGTCAGGA 4013286 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || ||||| || ||||| || ||||| || ||||| | || Sbjct 4013287 GGGATACCCTCCTTATCCTGGATTTTGGCCTTAACATTCTCGATGGTATCACTGGGCTCA 4013346 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || ||||||||||| || || ||||| || || | || || |||||| Sbjct 4013347 ACCTCCAGAGTAATGGTCTTTCCTGTTAAGGTCTTCACAAAGATTTGCATT 4013397 Score = 87.8 bits (96), Expect = 3e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| || || || | || | ||| || || | ||||| || ||||||||| Sbjct 4013395 ATTCCACCCCTCAGACGAAGGACAAGATGCAAGGTGGATTCTTTCTGGATGTTATAATCT 4013454 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || || | ||||| |||||||| || | ||||| |||||||| Sbjct 4013455 GAGAGGGTGCGGCCATCTTCAAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGA 4013514 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || ||||| || ||||| || ||||| || ||||| | || Sbjct 4013515 GGGATACCCTCCTTATCCTGGATTTTGGCCTTAACATTCTCGATGGTATCACTGGGCTCA 4013574 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || ||||||||||| || || ||||| || || | || || |||||| Sbjct 4013575 ACCTCCAGAGTAATGGTCTTTCCTGTTAAGGTCTTCACAAAGATTTGCATT 4013625 Score = 84.2 bits (92), Expect = 4e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| || || || || |||||||| | || | ||||| || || ||||| Sbjct 4014307 ATACCACCCCTCAGACGCAACACTAAATGCAGCGTGGATTCTTTCTGGATGTTGTAATCA 4014366 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || || | ||||| |||||||| || | ||||| || || || Sbjct 4014367 GACAGGGTACGGCCATCTTCAAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGA 4014426 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || |||||||| ||||| || ||||| || || || | || Sbjct 4014427 GGGATACCCTCCTTATCTTGGATTTTGGCCTTAACATTCTCAATTGTGTCACTGGGCTCA 4014486 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || ||||||||||| || || ||||| || || | || || |||||| Sbjct 4014487 ACCTCCAGAGTAATGGTCTTTCCTGTTAAGGTCTTCACAAAGATTTGCATT 4014537 >seq293 Length=1515377 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || || | ||| | ||| | || | ||||| || || || || Sbjct 419930 ATACCACCTCTCAGACGGAGTACAAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCA 419871 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || |||| || || || ||||| || |||||||| ||||| ||| Sbjct 419870 GAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGT 419811 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || |||||||||||||| ||| ||| ||||| ||||| || || | ||| Sbjct 419810 GGGATGCCCTCTTTATCTTGTATCTTACATTTCACATTGTCAATAGTGTCAGATGCTTCC 419751 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || |||||||| || ||||||| ||||| | || |||||||| Sbjct 419750 ACCTCCAGGGTAATGGTCTTTCCAGTTAGAGTTTTCACAAAGATCTGCAT 419701 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || || | ||| | ||| | || | ||||| || || || || Sbjct 420158 ATACCACCTCTCAGACGGAGTACAAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCA 420099 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || |||| || || || ||||| || |||||||| ||||| ||| Sbjct 420098 GAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGT 420039 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || |||||||||||||| ||| ||| ||||| ||||| || | || Sbjct 420038 GGGATGCCCTCTTTATCTTGTATCTTACATTTCACATTGTCAATAGTGTCACTGGGCTCA 419979 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||| || || || | || || | || |||||||| Sbjct 419978 ACCTCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 419929 Score = 89.7 bits (98), Expect = 9e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||||||||| || | ||| | || | || | ||||| || || || || || Sbjct 420839 CCACCTCTAAGACGGAGTACAAGGTGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAA 420780 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | | || | || |||| || || ||||||||||| |||||||| ||||| ||||| Sbjct 420779 AGTGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAAATCAATCTCTGCTGGTCTGGTGGG 420720 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || || ||||| || || || ||| ||| ||||| ||||| || | || || Sbjct 420719 ATACCCTCTTTGTCCTGGATCTTACATTTCACATTGTCAATAGTGTCACTGCACTCAACC 420660 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || ||||| || || || | ||||| | ||| |||||||| Sbjct 420659 TCAAGGGTGATGGTCTTGCCTGTGAGGGTTTTCACGAAGATCTGCAT 420613 Score = 87.8 bits (96), Expect = 3e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || | || | || | |||| ||||| || || || || Sbjct 90382 ATACCACCTCTCAAACGAAGCACGAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCG 90323 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || |||| || || |||||||| || |||||||| ||||| ||| Sbjct 90322 GAAAGTGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGT 90263 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| ||||| || || ||| ||||| ||||| || | || Sbjct 90262 GGGATACCCTCTTTGTCTTGGATCTTTGCTTTGACATTCTCAATAGTGTCACTGGGCTCA 90203 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || || || ||||| || || || | ||||| | ||| ||||||||||| Sbjct 90202 ACCTCAAGGGTGATGGTCTTGCCTGTGAGGGTTTTCACGAAGATCTGCATTTT 90150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904851017930400