Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3494 167 3e-35 seq3367 158 1e-32 seq3227 158 1e-32 seq1563 158 1e-32 seq1269 152 6e-31 seq3802 143 3e-28 seq425 89.7 6e-12 >seq3494 Length=31386 Score = 167 bits (184), Expect = 3e-35 Identities = 158/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| || || || | ||||||||||||||| || | | || Sbjct 4324 GCTTGGCCAGCTCTCCGGGCAGGAGGAGTCGGATGGCGGTCTGGATCTCCCGGGAGGTGA 4265 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || ||||| |||| | ||||||| ||||||| |||| | Sbjct 4264 TGGTGGAGCGCTTGTTGTAATGAGCCAGGCGGCAAGACTCGGTGGCGATGCGCTCGAAGA 4205 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 4204 TGTCATTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 4145 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||||||||||||||| Sbjct 4144 GCACCTGCTTGAGCACCTTGTA 4123 Score = 161 bits (178), Expect = 1e-33 Identities = 157/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| || || || | ||||||||||||||| || | | || Sbjct 18158 GCTTGGCCAGCTCTCCGGGCAGGAGGAGTCGGATGGCGGTCTGGATCTCCCGGGAGGTGA 18217 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || ||||| |||| | ||||||| ||||||| |||| | Sbjct 18218 TGGTGGAGCGCTTGTTGTAATGAGCCAGGCGGCAAGACTCGGTGGCGATGCGCTCGAAGA 18277 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 18278 TGTCATTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 18337 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||||||||||||||| Sbjct 18338 GGACCTGCTTGAGCACCTTGTA 18359 >seq3367 Length=54809 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| || || || | ||||||||||||||| || | | || Sbjct 7755 GCTTGGCCAGCTCTCCGGGCAGGAGGAGTCGGATGGCGGTCTGGATCTCCCGGGAGGTGA 7814 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | | ||||| |||| |||||| || ||||||| |||| | Sbjct 7815 TGGTGGAGCGCTTGTTGTAATAAGCCAGGCGGCAAGCCTCGTTGGCGATGCGCTCGAAGA 7874 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 7875 TGTCATTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 7934 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||||||||||||||| Sbjct 7935 GGACCTGCTTGAGCACCTTGTA 7956 >seq3227 Length=64935 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| || || || | ||||||||||||||| || | | || Sbjct 63959 GCTTGGCCAGCTCTCCGGGCAGGAGGAGTCGGATGGCGGTCTGGATCTCCCGGGAGGTGA 63900 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || ||||| ||| |||||| || ||||||| |||| | Sbjct 63899 TGGTGGAGCGCTTGTTGTAATGAGCCAGGCGGGAAGCCTCGTTGGCGATGCGCTCGAAGA 63840 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 63839 TGTCATTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 63780 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||||||||||||||| Sbjct 63779 GGACCTGCTTGAGCACCTTGTA 63758 >seq1563 Length=370006 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| || || || | ||||||||||||||| || | | || Sbjct 143513 GCTTGGCCAGCTCTCCGGGCAGGAGGAGTCGGATGGCGGTCTGGATCTCCCGGGAGGTGA 143572 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || ||||| ||| |||||| || ||||||| |||| | Sbjct 143573 TGGTGGAGCGCTTGTTGTAATGAGCCAGGCGGGAAGCCTCGTTGGCGATGCGCTCGAAGA 143632 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 143633 TGTCATTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 143692 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||||||||||||||| Sbjct 143693 GGACCTGCTTGAGCACCTTGTA 143714 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| || || || | ||||||||||||||| || | | || Sbjct 194229 GCTTGGCCAGCTCTCCGGGCAGGAGGAGTCGGATGGCGGTCTGGATCTCCCGGGAGGTGA 194170 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || ||||| ||| |||||| || ||||||| |||| | Sbjct 194169 TGGTGGAGCGCTTGTTGTAATGAGCCAGGCGGGAAGCCTCGTTGGCGATGCGCTCGAAGA 194110 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 194109 TGTCATTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 194050 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||||||||||||||| Sbjct 194049 GGACCTGCTTGAGCACCTTGTA 194028 Score = 116 bits (128), Expect = 5e-20 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| || || || | ||||||||||||||| || | | || Sbjct 132207 GCTTGGCCAGCTCTCCGGGCAGGAGGAGTCGGATGGCGGTCTGGATCTCCCGGGAGGTGA 132148 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || || || ||| | ||| | | | || ||| | Sbjct 132147 TGGTGGAGCGCTTGTTGTAATGAGCAAGGCGGGTAGACTCACCGGCAAAGCACTCGGAAA 132088 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||| || |||||||||| ||| | |||| |||||||| |||||||| Sbjct 132087 TGTCATTGACGAAGGAGTTCATGATGCCCATGGCCTTGGATGAGATGCCGGTGTCGGGGT 132028 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||||||||||||||| Sbjct 132027 GGACCTGCTTGAGCACCTTGTA 132006 >seq1269 Length=507884 Score = 152 bits (168), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| || || || | ||||||||||||||| || | | || Sbjct 494314 GCTTGGCCAGCTCTCCGGGCAGGAGGAGTCGGATGGCGGTCTGGATCTCCCGGGAGGTGA 494373 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || ||||| ||| |||||| || ||||||| |||| | Sbjct 494374 TGGTGGAGCGCTTGTTGTAATGAGCCAGGCGGGAAGCCTCGTTGGCGATGCGCTCGAAGA 494433 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||| || |||||||||| ||| | |||| |||||| || |||||||| Sbjct 494434 TGTCATTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATACCGGTGTCGGGGT 494493 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||||||||||||||| Sbjct 494494 GGACCTGCTTGAGCACCTTGTA 494515 >seq3802 Length=30714 Score = 143 bits (158), Expect = 3e-28 Identities = 153/202 (76%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| || || || | ||||||||||||||| || | | || Sbjct 25683 GCTTGGCCAGCTCTCCGGGCAGGAGGAGTCGGATGGCGGTCTGGATCTCCCGGGAGGTGA 25742 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || ||||| ||| |||||| || ||||||| |||| | Sbjct 25743 TGGTGGAGCGCTTGTTGTAATGAGCCAGGCGGGAAGCCTCGTTGGCGATGCGCTCGAAGA 25802 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||| || |||||||||| ||| | |||| ||||||||| |||||| Sbjct 25803 TGTCATTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGG-- 25860 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||||||||||||| Sbjct 25861 --ACCTGCTTGAGCACCTTGTA 25880 >seq425 Length=1236905 Score = 89.7 bits (98), Expect = 6e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 869831 ACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTGG 869890 ||||| || | ||||||| ||||| || ||||| |||||||||| ||| | | || Sbjct 161643 ACCTCTTCTACAGTCCAGAATGAGGCTTCTGCCTTCTTGTACATCTGCCAGATATCATGA 161702 Query 869891 TAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGCAACAGGGGTTCG 869944 || |||| ||||| | ||||||||||||||||||||| | || ||||| ||| Sbjct 161703 TACTGGATTGGGAAAATGACAAAGCGGTTGGGGTTGTCTCTCAGGAGGGGCTCG 161756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105072154764596