Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq13 109 5e-19 >seq13 Length=4293860 Score = 109 bits (120), Expect = 5e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| ||||| ||||| || || || ||||| || ||| | ||| |||||| Sbjct 4013169 AATGCAAATCTTTGTAAAAACCTTGACTGGAAAAACAATCACCCTAGAAGTGGAGCCAAG 4013110 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | || || |||||| ||||||||||| | ||| || || Sbjct 4013109 TGACACCATTGAAAATGTGAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCAGACCA 4013050 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 |||||||| || | ||| || ||||||||||| |||| | | || || | ||||| || Sbjct 4013049 GCAAAGACTGATCTTTGCAGGAAAACAGCTGGAAGATGGCCGTACCTTGTCAGATTATAA 4012990 Query 110452 CATTCAAAAAGAATCTACGTTGCAC 110476 ||| || ||||||||||| ||||| Sbjct 4012989 CATCCAGAAAGAATCTACTCTGCAC 4012965 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||||||||| || || | || |||||||| ||||| | || |||||| Sbjct 4013852 ATGCAAATATTTGTGAAGACCCTCACTGGCAAAACAATTACTCTGGAGGTGGAGCCAAGT 4013793 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || || || ||| ||||||||||| | || ||||| Sbjct 4013792 GACACAATTGAGAATGTGAAGGCCAAAATTCAAGACAAAGAAGGTATTCCTCCAGATCAG 4013733 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | |||| ||| || ||||||||||| |||| | || | | ||||| ||| Sbjct 4013732 CAAAGATTGATTTTTGCCGGGAAACAGCTGGAAGATGGTCGCACCCTATCAGATTATAAC 4013673 Query 110453 ATTCAAAAAGAATCTACGTTGCA 110475 || || |||||||| || ||||| Sbjct 4013672 ATCCAGAAAGAATCCACCTTGCA 4013650 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| |||||||| ||||| || || |||||||| ||||| | || |||||| Sbjct 4014081 AATGCAGATATTTGTAAAAACCTTGACTGGCAAAACAATTACTCTGGAGGTGGAGCCAAG 4014022 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | || || || ||| ||||||||||| | ||| || || Sbjct 4014021 TGACACCATTGAAAATGTGAAGGCCAAAATTCAAGACAAAGAAGGTATTCCCCCAGACCA 4013962 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || || || | ||| ||||||||||| || |||| | | || | | || ||||| Sbjct 4013961 GCAGAGGCTGATATTTGCCGGTAAACAGCTTGAAGATGGCCGCACCCTCTCAGACTACAA 4013902 Query 110452 CATTCAAAAAGAATCTAC 110469 ||||||||| ||||| || Sbjct 4013901 CATTCAAAAGGAATCCAC 4013884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412714866401684