Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq13 113 7e-20 >seq13 Length=4293860 Score = 113 bits (124), Expect = 7e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || ||||||| || || ||||||||||| || | || || || | | | Sbjct 4013167 TGCAAATCTTTGTAAAAACCTTGACTGGAAAAACAATCACCCTAGAAGTGGAGCCAAGTG 4013108 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| || || || ||| |||||||| ||||| || || || | Sbjct 4013107 ACACCATTGAAAATGTGAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCAGACCAGC 4013048 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| || |||||||| ||||| | || ||| | || || |||||||||| | Sbjct 4013047 AAAGACTGATCTTTGCAGGAAAACAGCTGGAAGATGGCCGTACCTTGTCAGATTATAACA 4012988 Query 146212 TACAAAAAGAATCGACT 146228 | || |||||||| ||| Sbjct 4012987 TCCAGAAAGAATCTACT 4012971 Score = 111 bits (122), Expect = 2e-19 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||||||||| | || || | || || |||||||||||| | || || || | | | Sbjct 4013851 TGCAAATATTTGTGAAGACCCTCACTGGCAAAACAATTACTCTGGAGGTGGAGCCAAGTG 4013792 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||| || ||||| ||| |||||||| ||||| || ||||| | Sbjct 4013791 ACACAATTGAGAATGTGAAGGCCAAAATTCAAGACAAAGAAGGTATTCCTCCAGATCAGC 4013732 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | |||||||| || ||||| | || ||| | | || || |||||||||| | Sbjct 4013731 AAAGATTGATTTTTGCCGGGAAACAGCTGGAAGATGGTCGCACCCTATCAGATTATAACA 4013672 Query 146212 TACAAAAAGAATCGAC 146227 | || |||||||| || Sbjct 4013671 TCCAGAAAGAATCCAC 4013656 Score = 105 bits (116), Expect = 1e-17 Identities = 166/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| ||||||| || || || |||||||||||| | || || || | | | Sbjct 4014079 TGCAGATATTTGTAAAAACCTTGACTGGCAAAACAATTACTCTGGAGGTGGAGCCAAGTG 4014020 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| || ||||| ||| |||||||| ||||| || || || | Sbjct 4014019 ACACCATTGAAAATGTGAAGGCCAAAATTCAAGACAAAGAAGGTATTCCCCCAGACCAGC 4013960 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || || ||||| |||||||| | || ||| | || | |||| || || | Sbjct 4013959 AGAGGCTGATATTTGCCGGTAAACAGCTTGAAGATGGCCGCACCCTCTCAGACTACAACA 4013900 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 | ||||| ||||| || ||||| | || | | | |||||||| | ||||||| Sbjct 4013899 TTCAAAAGGAATCCACCCTCCATCTTGTCCTCAGGCTGAGAGGAGGGATGCAAATATT 4013842 Score = 96.9 bits (106), Expect = 5e-15 Identities = 157/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || || | || || |||||||||||| | || || || | | | Sbjct 4014307 TGCAGATTTTTGTGAAGACCCTCACTGGCAAAACAATTACTCTGGAGGTGGAGCCAAGTG 4014248 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||| || ||||| ||| |||||||| ||||| || || || | Sbjct 4014247 ACACAATTGAGAATGTGAAGGCCAAAATTCAAGACAAAGAAGGTATTCCCCCAGACCAGC 4014188 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || || ||||| |||||||| | || ||| | | || | |||| || || | Sbjct 4014187 AGAGGCTGATATTTGCCGGTAAACAGCTTGAAGATGGTCGCACCCTCTCAGACTACAACA 4014128 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||| ||||| ||| |||| || || | || |||||||| || Sbjct 4014127 TCCAAAAGGAATCCACTCTCCACTTGGTTCTTCGCTTAAGAGGTGG 4014082 Score = 93.3 bits (102), Expect = 7e-14 Identities = 156/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || ||||||||||| || |||||| | || || || | | | Sbjct 4013395 TGCAAATCTTTGTGAAGACCTTAACAGGAAAGACCATTACTCTGGAGGTTGAGCCCAGTG 4013336 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | ||||| || ||||| || ||| || || || || || || || | Sbjct 4013335 ATACCATCGAGAATGTTAAGGCCAAAATCCAGGATAAGGAGGGTATCCCTCCTGACCAGC 4013276 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || || ||||| |||||||| | || ||| | || | |||||||||| | Sbjct 4013275 AGAGGCTGATATTTGCCGGTAAACAGCTTGAAGATGGCCGCACCCTCTCAGATTATAACA 4013216 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || |||||||| || ||||| | || | || ||||||| || Sbjct 4013215 TCCAGAAAGAATCCACCCTCCATCTTGTTCTCCGTCTAAGAGGTGG 4013170 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || ||||||||||| || |||||| | || || || | | | Sbjct 4014535 TGCAAATCTTTGTGAAGACCTTAACAGGAAAGACCATTACTCTGGAGGTTGAGCCCAGTG 4014476 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||| || ||||| ||| ||| || || || || || ||||| | Sbjct 4014475 ACACAATTGAGAATGTTAAGGCCAAAATCCAAGATAAGGAGGGTATCCCTCCAGATCAGC 4014416 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || || ||||| || ||||| | || ||| | || | | ||||| || | Sbjct 4014415 AGAGGCTGATCTTTGCTGGCAAACAGCTTGAAGATGGCCGTACCCTGTCTGATTACAACA 4014356 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || |||||||| || | |||||||| || || | || || |||| Sbjct 4014355 TCCAGAAAGAATCCACGCTGCATTTAGTGTTGCGTCTGAGGGGTGGTA 4014308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785918875508960