Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1242 215 4e-50 seq470 170 1e-36 seq485 100 2e-15 seq166 95.1 9e-14 seq2952 86.0 5e-11 >seq1242 Length=518156 Score = 215 bits (238), Expect = 4e-50 Identities = 689/1054 (65%), Gaps = 16/1054 (2%) Strand=Plus/Minus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||| ||| || || || || |||||||| | ||||| || ||||| ||||| || || Sbjct 1330 GCAGACACGTTCAGGATTCCGTTGGCATCAATGTCAAAGGTTACTTCGATTTGTGGCACG 1271 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 || | |||| || || || || || | ||| | ||||| || || || || Sbjct 1270 CCACGTGGAGCTGGAGGAATGCCACTCAGTTCAAACTTGCCCAGGAGGTTGTTGTCCTTT 1211 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605 || | | || ||||||||| | | |||||| || | || || || || || || Sbjct 1210 GTCATTGCTCTCTCACCCTCGTAGACTTGGATGAGGACACCTGTCTGGTTGTCAGAGTAG 1151 Query 281606 GTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 281664 || | || | ||||| | | || ||||| || ||||| | | || | ||| Sbjct 1150 GTGCTGAAGA-TCTGGGTCTGCTTGGTGGGAATGGTGGTGTTGCGTTTGATGAGCACGGT 1092 Query 281665 CATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 281724 ||| | || || |||||||||| ||||||||| || || | ||||| | |||| || Sbjct 1091 CATCACTCCTCCGGCTGTTTCTAGACCAAGAGAGAGTGGTGCCACATCCAGCAGGAGAAG 1032 Query 281725 ATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATA 281784 || || | || ||| | | |||| || || || ||||| | ||||| ||||| Sbjct 1031 ATCCTGGACCTTCTCAGACTTGTCACCAGTCAGGATGGCAGCTTGTACCGCAGCTCCATA 972 Query 281785 TGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGA 281844 || |||||||| || || || | | | |||| | || || ||||| || | | Sbjct 971 GGCGACAGCTTCGTCGGGGTTGATGCTCTTGTTTAACTCCTTCCCGTTGAAGAAGTCTTG 912 Query 281845 AAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCA 281903 ||| |||| ||| || ||||||||||| | || ||||| |||| ||||| ||||| | Sbjct 911 AAGGAGTT-TCTGCACTTTAGGAATACGTGTAGAGCCTCCGACTAGAACAATGTCATGAA 853 Query 281904 CCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTC 281963 ||| || || |||| || | ||| | | |||||||| || ||||| | | Sbjct 852 TCTGAGACTTGTCCATCTTGGCATCTCTCAGGGCCTTTTCAACAGGGTCAAGGGTTCCCC 793 Query 281964 TAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TC 282021 | || | ||||||||| ||||| || || || || || || || | || || || Sbjct 792 TGAAGAGGTCTGAACAGAGTTCCTCAAAGCGGGCCCTGGT--GATGGAAGTGTAGAAGTC 735 Query 282022 AATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACG 282081 ||| || || ||| ||| |||| ||||| | | || || || || || | || Sbjct 734 AATGCCCTCATACAGAGAGTCAATCTCAATGCTGGCCTGGGTGCTGGAGGACAGGGTGCG 675 Query 282082 TTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGAT--TGATTCAAA 282139 || || | ||||| ||||| || || || | | ||| | || || || | | Sbjct 674 CTTGGCTCTCTCACAAGCTGTTCTGAGCCTCCTCAGAGCTCT--CTTATTCTGGCTGATG 617 Query 282140 TCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAA 282199 || | || | || | ||||| || || ||| | | || | ||| |||||||| Sbjct 616 TCCTTCTTGTGCTTGCGCTTGAGTTCCTCCACAAAGTGGTTCACCATACGGTTATCAAAG 557 Query 282200 TCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCA 282259 ||||| || |||| | ||| | || | || || | || | || | ||| || ||| Sbjct 556 TCTTCTCCACCCAGATGAGTGTCACCCGCTGTGGCCTTCACCTCAAAGACTCCGTCATCA 497 Query 282260 AGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT-CAT 282318 | || | | | |||||| || ||||| |||| ||||| || |||| || | | Sbjct 496 ATAGTGAGGATGGAGACATCAAACGTGCCACCTCCCAGGTCAAAGATCAGTATGTTGCGT 437 Query 282319 T-TCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAA 282377 | | | | ||| |||||| | || || |||| |||||||| || || ||||||| Sbjct 436 TCACCTCGGCTT--CCTTTATCCAAGCCGTAAGCAATGGCAGCAGCTGTGGGCTCATTAA 379 Query 282378 TAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTG 282437 | ||||||| ||||| | |||||| || || ||||||||||||||||| | |||| Sbjct 378 TGATTCTCAGCACATTTAAACCAGCTATGACCCCGGCATCTTTAGTGGCTTGGCGCTGTG 319 Query 282438 AATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 | || || ||||| || || || || || || || Sbjct 318 AGTCATTGAAATAGGCGGGCACGGTGATCACAGC 285 >seq470 Length=1166527 Score = 170 bits (188), Expect = 1e-36 Identities = 677/1056 (64%), Gaps = 12/1056 (1%) Strand=Plus/Plus Query 281432 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 281491 ||||| |||||||||||||| || | ||||| |||||||| || || || || || | Sbjct 641784 ACATTCAGAATACCATTGGCGTCAATGTCAAAGGTGACTTCGATCTGTGGCACACCGCGG 641843 Query 281492 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 281551 ||||||| ||||| || || | |||| | ||||| || || || || || | Sbjct 641844 GGAGCAGGGGGGATGCCACTCAGTTCAAATTTGCCCAGGAGGTTGTTGTCCTTGGTCATG 641903 Query 281552 TTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTA 281611 ||| ||||| || | | ||||| || ||| || || || || || || || Sbjct 641904 GCTCGCTCACCTTCATACACCTGGATGAGGACACCAGGCTGGTTGTCCGAGTAGGTGGTG 641963 Query 281612 AATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAAT 281670 || ||||| | | || |||||| ||||| || | | || | |||||| | Sbjct 641964 AAGG-TCTGGGTCTGCTTGGTAGGAATGGTTGTATTGCGTTTGATGAGGGCGGTCATGAC 642022 Query 281671 ACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTG 281730 || |||||||| || | || | ||||| |||| ||||| | ||||| | | || Sbjct 642023 TCCTCCAGCTGTCTCCAGGCCCAAGGAAAGTGGAGCCACATCTAGTAGGAGCAGGTCCTG 642082 Query 281731 AAGTTTTTCATCAGTT-TGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAA 281789 | | || | | || | || | || ||||| |||||| |||||| || || || | Sbjct 642083 CACAATCTC-TGACTTATCCCCCATCAGGATAGCACCTTGAACAGCAGCCCCGTAGGCCA 642141 Query 281790 CAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAA 281849 | |||||||| ||||||| | | | || |||| | | || ||||| || | || | Sbjct 642142 CGGCTTCATCTGGATTAATACTCTTGTTCAGTTCTCTTCCGTTGAAGAAGTCCTGCAGCA 642201 Query 281850 GTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTG 281909 ||| | || || || ||||| | ||||| || || | ||||||||||| | ||||| Sbjct 642202 GTTTTTGCACTTTGGGGATACGTGTGGATCCCCCCACCAGGACAATTTCATGAATCTGTG 642261 Query 281910 ATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACA 281969 |||| ||||| || | || | |||| |||||||| || || | | | || | Sbjct 642262 ATTTGTCCAGCTTGGCGTCTCTCAGGGCTTTCTCAACGGGCTCCAGGGTACCACGGAAGA 642321 Query 281970 AGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTT 282029 || || || | ||| || || || || || | || | | | | ||||| || | Sbjct 642322 GATCAGAGCACATTTCCTCAAAGCGGGCCCTGGTGATAGAGGTGTAAAAGTCAATGCCCT 642381 Query 282030 CGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCAC 282089 | |||| ||| |||| |||||| | | || || || || || | || || || | Sbjct 642382 CAAACAGAGAGTCAATTTCAATGCTTGCCTGGGTGCTGGAGGACAGGGTGCGCTTGGCTC 642441 Query 282090 GTTCACATGCTGTCCTTAGTCTTCGTAAGG--CTTTTGCTGATTGATTCAAATCTGTTTT 282147 ||||| ||||| || || || | | || || ||| | ||| | | || |||| Sbjct 642442 TCTCACAGGCTGTTCTCAGCCTCCTCAGGGCCCTCTTGTT--TTGGCTAACGTCCTTTTT 642499 Query 282148 ATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACC 282207 | || | |||||| || || ||| | | || | || |||||||| || || || Sbjct 642500 GTGCTTGCGCTTGAATTCCTCCACAAAGTGGTTAACCATGCGGTTATCAAAGTCCTCCCC 642559 Query 282208 TCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAA--GAGAC 282265 || | | ||| | |||| || || |||| | || | || || |||| | || Sbjct 642560 ACCTAGATGAGTGTCACCTGCTGTGGCCTTTACCTCAAAGATGCCGTCATCAATGGTGAG 642619 Query 282266 AAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTG 282325 | ||| ||||| ||| ||||| || | || || || || | || |||| | Sbjct 642620 GATGGAG--ACATCGAAGGTGCCACCTCCAAGGTCGAAGATGAGAATGTTGCGTTCTCCG 642677 Query 282326 TCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 282385 ||| || || || || || | || || || ||||| ||||| || |||||| Sbjct 642678 CGACTCCCTTTGTCCAGGCCGTAGGCGATGGCTGCTGCTGTTGGCTCATTGATGATTCTC 642737 Query 282386 AAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTA 282445 | ||||| || |||||||| || ||||| || || || || | || || || || Sbjct 642738 AGCACATTGAGTCCAGCAATGACCCCGGCATCCTTGGTAGCCTGGCGCTGAGAGTCATTG 642797 Query 282446 AAATATGCAGGAACAGTAATAACGGCATCTGTTACT 282481 || || || || || || || ||||||| || ||| Sbjct 642798 AAGTAGGCTGGGACGGTGATGACGGCATTGGTGACT 642833 >seq485 Length=1142615 Score = 100 bits (110), Expect = 2e-15 Identities = 357/550 (65%), Gaps = 10/550 (2%) Strand=Plus/Minus Query 281771 ATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCA 281830 ||| | |||||||| || ||||| ||||| || || | | | ||||||| ||| ||| Sbjct 1085009 ATACCTGCACCATAGGCCACAGCCTCATCTGGGTTGATGCTCTTGTTTAGTTCTTTGCCA 1084950 Query 281831 TTGAAAAAATTTGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAA 281889 ||||| || | ||| || | ||| | || |||||||| | || |||||||||| Sbjct 1084949 TTGAAGAAGTCCTGAAGCAGCT-TCTGGATTTTGGGAATACGTGTGGACCCTCCAACTAG 1084891 Query 281890 TACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG 281949 ||||| ||||| | || || || || || || | ||| | | || || || || Sbjct 1084890 GACAATATCATGGATTTGGGACTTGTCAAGCTTGGCATCACGCAGGGCCTTCTCTACTGG 1084831 Query 281950 TTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGT 282009 || || |||| || | || | | || ||||| ||| ||||| || || | Sbjct 1084830 ATCCAGGGTGCCTCTGAAGAGATCAGCATTCAGCTCTTCAAATCGGGCTCTTGT--GATT 1084773 Query 282010 GACAT-TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAA 282067 || | || || ||||||||||| ||| || || | ||| || | | || || Sbjct 1084772 GAGGTATAGAAGTCAATTCCTTCATACAGGGAGTCGATTTCTATGCTGGCCTGGGTACTG 1084713 Query 282068 GAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCT 282127 || || || | ||| || ||||| ||||| || || | || | || | ||| | || Sbjct 1084712 GAGGACAGGGTACGCTTTGCACGCTCACAGGCAGTGCGGAGACGGCGAACAGCTCT--CT 1084655 Query 282128 GATTGATTCAAATCTGTTTTATAT--TTTCTCTTGAAATCTTCAACACACCATGTTACAA 282185 ||| | ||| | ||| | | ||||||||||| ||| | ||| | | || | Sbjct 1084654 TGTTGTCACTAATGTCTTTCTTGTGCTTTCTCTTGAACTCTGCTACAAAGTGATTCACCA 1084595 Query 282186 GACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGA 282245 | |||||||| |||||||| ||||| | ||| | || | || | | || | | Sbjct 1084594 TTCTGTTATCAAAGTCTTCACCACCCAAATGAGTGTCACCAGCTGTTGACTTGACCTCAA 1084535 Query 282246 AAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAA 282305 | | || || |||| | || | || |||||| |||||||||||| | ||||||| Sbjct 1084534 AGATGCCGTCCTCAATGGTCAGGATAGAGACATCAAAGGTTCCACCACCAAGGTCAAAAA 1084475 Query 282306 TAAGTACATT 282315 | || ||||| Sbjct 1084474 TCAGCACATT 1084465 >seq166 Length=2004940 Score = 95.1 bits (104), Expect = 9e-14 Identities = 233/348 (67%), Gaps = 8/348 (2%) Strand=Plus/Plus Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 || || || || ||||| ||||| ||||||| | ||| || |||| | | |||||||| Sbjct 1619988 GCTCCGTAGGCTACAGCCTCATCTGGATTAATACTTTTGTTCAGTTCTCTTCCATTGAAG 1620047 Query 281837 AAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATT 281896 || | || || | | | ||| ||||| |||| ||||| ||||| | |||||| Sbjct 1620048 AAGTCCTGCAGGAGCTTTTGGATCTTTGGAATGCGAGTAGATCCGCCAACCAGTACAATG 1620107 Query 281897 TCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTC--AA 281954 ||||| ||||| | || |||| || | ||| | | || || || ||||| || Sbjct 1620108 TCATGAACCTGGGCCTTGTCCATCTTGGCATCTCTCAGAGACTTCTCTACTGGTTCCAAA 1620167 Query 281955 GACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT 282014 | || | | |||| ||||| | |||||| || || || | ||| ||| || | Sbjct 1620168 GTCC--CACGGAACAGGTCTGCATTAAGTTCCTCAAAGCGGGCGCGAGT--GAGGGAAGT 1620223 Query 282015 -TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGA 282072 || || ||||| ||||| | | || || | ||||| | | |||||| ||||| Sbjct 1620224 GTAAAAGTCAATGCCTTCATAAAGGGAGTCTATCTCAATACTGGCTTGAGTGCTGGAAGA 1620283 Query 282073 TAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC 282120 || | ||| || ||||||||||| ||||| | || || || | ||| Sbjct 1620284 CAGGGTACGCTTGGCACGTTCACAGGCTGTACGCAGCCTACGAATGGC 1620331 Score = 91.5 bits (100), Expect = 1e-12 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 281431 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 281490 |||||| | ||| ||||||||||| | ||||| || ||||| |||||||| ||||| | Sbjct 1614815 CACATTCATAATTCCATTGGCATCGATGTCAAAGGTAACTTCGATTTGAGGAACCCCACG 1614874 Query 281491 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAA 281550 ||||||| ||||| || ||| | |||| |||||||| ||| || || || || | Sbjct 1614875 AGGAGCAGGCGGGATACCGGTCAACTCAAATTTTCCCAGAAGATTGTTGTCCTTGGTCAT 1614934 Query 281551 TTTTCGTTCACCCTCGAA 281568 | || |||||| || || Sbjct 1614935 TGCTCTTTCACCTTCAAA 1614952 Score = 86.0 bits (94), Expect = 5e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || |||||||| || | || || |||||||| ||||| || || | | || Sbjct 1621928 TTCTTGTCCAGACCATAAGCTATGGCTGCTGCAGTTGGCTCATTGATGATACGGAGGACG 1621987 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || |||||||| || |||| ||||||||||| || || || || ||||| || || || Sbjct 1621988 TTGAGACCAGCGATGGTTCCAGCATCTTTAGTTGCCTGCCTCTGGGAATCATTGAAGTAA 1622047 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 || || ||||| | || |||| Sbjct 1622048 GCTGGGACAGTGACCACTGCAT 1622069 >seq2952 Length=87637 Score = 86.0 bits (94), Expect = 5e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 ||||| || ||||| |||| ||||||||||||||||||||||| | || ||||||||| Sbjct 16104 TTATCTAGGCCATAAGCAAGGGCAGCAGCAGTTGGTTCATTAATTACTCGCAAAACATTC 16163 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426 | |||||||| || |||||||| || || Sbjct 16164 AATCCAGCAATCTGCCCAGCATCTTTTGTTGC 16195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739393775644488