Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq82 109 6e-19 seq360 105 8e-18 >seq82 Length=2563694 Score = 109 bits (120), Expect = 6e-19 Identities = 228/333 (68%), Gaps = 14/333 (4%) Strand=Plus/Plus Query 162643 ACCATCTCTAGATTGGTCTT-AAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTT 162701 ||||| || ||||||||| || |||||| || || || ||| ||| |||| ||||| Sbjct 864862 ACCATTTCAGCATTGGTCTTTAAAGGGAAA-TCTGTTCCACAGGTATTGATAAGGTATTT 864920 Query 162702 CCACTTAACGCTGAGTCCGT----ACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGC 162757 ||||| || ||| | | |||| || | | |||||||||||| |||||||| | Sbjct 864921 CCACTCTAC----AGTACTTTTCAACAGGTCTTCCATACAGTTCAGATCAGCCTGGACTC 864976 Query 162758 GACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAAC 162817 | ||| || ||||| ||||| ||||| | | || ||||| || ||||| || | Sbjct 864977 GTGACCATGAAGCGTATACGACCGACTCCAGTTTTGATGCAACAAACACGTTGTCAAAGC 865036 Query 162818 ACGAAACTATCCCCATCACGGCCAG-TGAGAA-CATCGGGTCCGCTTTCCTATCTACGTG 162875 | ||| |||| | ||| ||| | ||| || || || | |||| ||||| ||| Sbjct 865037 AAGAAGCTATGGCTTGCACAGCCTGATGATAAGTGTCTGG--GGATTTCACATCTATGTG 865094 Query 162876 TACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTAT 162935 || ||||| | ||| ||||| | || || | || | | |||||| |||||||| || Sbjct 865095 CACACAGTAAATATTTTGAGGAGTATAAATTGATCTTAAAAGTCTCTCAAACATCTCAAT 865154 Query 162936 CTTATGGTGTACCACGATAGAATACGCTATGGG 162968 | | || | ||| |||||||| || || || Sbjct 865155 GTCACCATGGATCACCATAGAATAGGCAATAGG 865187 >seq360 Length=1354455 Score = 105 bits (116), Expect = 8e-18 Identities = 331/505 (66%), Gaps = 17/505 (3%) Strand=Plus/Minus Query 176975 CACGTGAATGAAAGCGTCTCCCGGGACGTAATTTTCGTAATTCTCTCTCGATGTTCCGAG 177034 ||| || ||||||| |||| | || | |||||||| || |||||||| | | || || Sbjct 310082 CACATGGATGAAAGAGTCTGCTGGTATATAATTTTCATAGTTCTCTCTTGGAGGACCTAG 310023 Query 177035 TACTATGGGTACCGCACCTGCCATAAGAGATCGGTAGAGTTTTTCGGTAATATAGTCCCT 177094 || ||||| || | || || | || | || |||||||| || ||||||||| | Sbjct 310022 CACAATGGGCACAGATCCCGCTAGTAGTGCATTATAAAGTTTTTCCGTTATATAGTCCTT 309963 Query 177095 GTGTACGGAGTTCTCAAACGCGAGATAGAATTTACAGGAAGATAGTAGCGGGATGAAGTC 177154 ||| | || || ||||| | | || ||||| || | ||| | || || |||| Sbjct 309962 GTGGAGAGAATTTTCAAATGACAAGTAAAATTTGCAAGTAGAGATGGTTGGAATCAAGTT 309903 Query 177155 ATCATCGGGTATATAATCTCCTACTACGTTCCCGTATACATGTATATCTATGTGTTTACT 177214 | ||| | || || || | | | || || | || || |||| ||| | Sbjct 309902 TTTATCACTCAAGTATTCCCCAAAGGCTTGGCCATAAGTTAGGATTTCAATGTATTTGTT 309843 Query 177215 GAGCTCTAGGTAGTATCTCGATCTCACGTGGTCGTTGTTCCAATTGCTGACGACCCAGCA 177274 ||| || ||| ||| | |||||| || || ||||| ||||| || ||||| || Sbjct 309842 GAGTTCATTGTAATATTTGACTCTCACATGATCAGGATTCCAGTTGCTTACAACCCAACA 309783 Query 177275 AACTAACTTGCTCTTTGCG-GGAACGGGATTCGA-TACTAATGC---AGTGTCTCTGAGC 177329 || | ||| || |||| || || ||| | | | || | |||| | || | Sbjct 309782 GACCAGTTTG-TCCTTGCTTGGCAC----TTCAAATTCAAAGGGCTGAGTGCTTACGACC 309728 Query 177330 GTTAGTGATCCATAGGGCACGTGAATATCCGAGTCGCGTCTGTACGTTAACGTGAGATTG 177389 | | | ||||| ||||| ||||| || ||||| |||||||| || ||||||||||| Sbjct 309727 ATAA---AGCCATAAGGCACCTGAATGTCTGAGTCCCGTCTGTAGGTCAACGTGAGATTA 309671 Query 177390 AAAAGGTTTTCTATAC--CTTGTTTGAAGGGGCTGTTACTGGGCGATTCTAAGTTCATCC 177447 || | | ||| || | ||| |||| || | | | || || |||| ||||||| Sbjct 309670 AATAAATGTTCAATGCCACTTTTTTG--TGGCGTATGGGTTGGTGACTCTAGATTCATCC 309613 Query 177448 ATATCCACTTTTGAAAGGTTGGTCT 177472 ||||||| || ||||||| |||||| Sbjct 309612 ATATCCATTTCTGAAAGGGTGGTCT 309588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578249880684800