Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq13 136 9e-27 seq293 87.8 4e-12 >seq13 Length=4293860 Score = 136 bits (150), Expect = 9e-27 Identities = 149/197 (76%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCTGACACAGTCGAA 206241 ||||| | || |||||||| ||||| | |||||||| |||| ||||| | ||| Sbjct 4013153 AAAACCTTGACTGGAAAAACAATCACCCTAGAAGTGGAGCCAAGT---GACACCATTGAA 4013097 Query 206242 TCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATC 206301 || ||| ||||||||||| |||||||| ||| || ||| |||||||| ||| Sbjct 4013096 AATGTGAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCAGACCAGCAAAGACTGATC 4013037 Query 206302 TTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAG 206361 || || ||||| ||| |||||||||| | || ||| | ||||| ||| |||||||||| Sbjct 4013036 TTTGCAGGAAAACAGCTGGAAGATGGCCGTACCTTGTCAGATTATAACATCCAGAAAGAA 4012977 Query 206362 TCTACTCTTCACCTTGT 206378 |||||||| |||||||| Sbjct 4012976 TCTACTCTGCACCTTGT 4012960 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| ||||| || || || || || |||||| | || || ||| |||| Sbjct 4014761 CAAATATTTGTGAAAACACTTACTGGGAAGACCATCACTCTTGAGGTCGAACCAAGTGAC 4014702 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| || |||||||| ||||||||||| || ||| || Sbjct 4014701 ACCATTGAAAATGTCAAGGCTAAAATTCAAGACAAAGAAGGAATCCCACCTGACCAGCAG 4014642 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | ||||| || ||||| || ||||||||||| | || | | |||||||| | Sbjct 4014641 AGATTAATCTTTGCTGGAAAACAATTGGAAGATGGCCGTACACTTTCTGATTACAATATT 4014582 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||||||||| || | ||| | |||||| | ||| || Sbjct 4014581 CAGAAAGAGTCAACCTTGCACTTAGTTTTGCGTCTTAGA 4014543 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 |||||||| |||||||| |||||||||| ||||| || | ||| || | ||||||||| Sbjct 4012960 ACAAGGTGCAGAGTAGATTCTTTCTGGATGTTATAATCTGACAAGGTACGGCCATCTTCC 4013019 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 ||||| ||||| || ||||| || | ||| || Sbjct 4013020 AGCTGTTTTCCTGCAAAGATCAGTCTTTGCTG 4013051 >seq293 Length=1515377 Score = 87.8 bits (96), Expect = 4e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || |||||||| || || ||||| | || || || |||| Sbjct 420388 CAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACCCTTGAGGTTGAGCCCAGTGAC 420447 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || || |||||||| ||| ||||| ||||| || || || ||| || Sbjct 420448 ACTATTGAGAATGTCAAAGCAAA-GATCCAAGACAAAGAGGGTATCCCACCAGACCAGCA 420506 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 || | ||||| || || || ||| |||||||||| | || | | || |||||| | Sbjct 420507 GCGATTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACACTTTCTGACTACAACAT 420566 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||| ||||| ||||||||||| Sbjct 420567 CCAGAAAGAATCTACCCTTCACCTTGT 420593 Score = 84.2 bits (92), Expect = 5e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| |||||||| || || ||||| | || || || |||||| | || Sbjct 92676 AAAACCCTCACAGGCAAGACCATCACCCTTGAGGTTGAGCCCAGTGACACTATTGAGAAT 92735 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || |||||||| ||| ||||| ||||| || || || ||| || ||| | || || Sbjct 92736 GTCAAAGCAAA-GATCCAAGACAAAGAGGGTATCCCACCAGACCAGCAGAGATTGATATT 92794 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || |||||| ||||||| || | || | | || |||||| |||||||||| || Sbjct 92795 TGCTGGCAAGCAGCTGGAAGACGGCCGCACCCTTTCTGACTACAACATCCAGAAAGAATC 92854 Query 206364 TACTCTTCACCTTGT 206378 || ||||||||||| Sbjct 92855 CACCCTTCACCTTGT 92869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181439401314148