Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq13 107 2e-18 seq293 82.4 7e-11 >seq13 Length=4293860 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || ||||||||||||||||| | ||| || |||||| ||||||||||||| | Sbjct 4013887 GATTCCTTTTGAATGTTGTAGTCTGAGAGGGTGCGGCCATCTTCAAGCTGTTTACCGGCA 4013946 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || || | ||| || ||||| || || |||||||| || |||||| |||| Sbjct 4013947 AATATCAGCCTCTGCTGGTCTGGGGGAATACCTTCTTTGTCTTGAATTTTGGCCTTCACA 4014006 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | || || | |||||||| || | || | ||||| ||||||| |||||| Sbjct 4014007 TTTTCAATGGTGTCACTTGGCTCCACCTCCAGAGTAATTGTTTTGCCAGTCAAGGTTTTT 4014066 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 4014067 ACAAATATCTGCAT 4014080 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 131906 AAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGC 131965 ||||| | |||||| || | | || || ||||| ||||||||||| | ||| || Sbjct 4014091 AAGCGAAGAACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCTGAGAGGGTGCGA 4014150 Query 131966 GAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCT 132025 |||||| ||||||||||||| | | || || | ||| || ||||| || || |||||| Sbjct 4014151 CCATCTTCAAGCTGTTTACCGGCAAATATCAGCCTCTGCTGGTCTGGGGGAATACCTTCT 4014210 Query 132026 TTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTC 132085 || || |||||| |||| | || | || || | |||||||| || | || Sbjct 4014211 TTGTCTTGAATTTTGGCCTTCACATTCTCAATTGTGTCACTTGGCTCCACCTCCAGAGTA 4014270 Query 132086 AGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | ||||| ||||| || || || | ||||||||||| Sbjct 4014271 ATTGTTTTGCCAGTGAGGGTCTTCACAAAAATCTGCAT 4014308 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||| || ||||| || || || |||||| |||||| |||||||| || | | Sbjct 4012975 GATTCTTTCTGGATGTTATAATCTGACAAGGTACGGCCATCTTCCAGCTGTTTTCCTGCA 4013034 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | || || ||||| || || |||||||| || ||| || |||| Sbjct 4013035 AAGATCAGTCTTTGCTGGTCTGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTCACA 4013094 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | || || | ||||||||||| | || | ||||| ||||||| |||||| Sbjct 4013095 TTTTCAATGGTGTCACTTGGCTCCACTTCTAGGGTGATTGTTTTTCCAGTCAAGGTTTTT 4013154 Query 132110 ATGAAAATCTGCAT 132123 | || || ||||| Sbjct 4013155 ACAAAGATTTGCAT 4013168 >seq293 Length=1515377 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||| || ||||||||||| | ||| || |||||| ||||| || |||| | Sbjct 419894 GATTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCA 419835 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| || ||||| || ||||| |||||||| || || ||||| Sbjct 419834 AAGATCAATCTCTGCTGGTCTGGTGGGATGCCCTCTTTATCTTGTATCTTACATTTCACA 419775 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||| || | | ||||| || | || | || || ||||| |||||||| Sbjct 419774 TTGTCAATAGTGTCAGATGCTTCCACCTCCAGGGTAATGGTCTTTCCAGTTAGAGTTTTC 419715 Query 132110 ATGAAAATCTGCATGACT 132127 | || ||||||||| || Sbjct 419714 ACAAAGATCTGCATGGCT 419697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476461138963680