Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq13 96.9 3e-15 >seq13 Length=4293860 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || ||||| ||||| | || || | || || || ||| Sbjct 4014536 ATGCAAATCTTTGTGAAGACCTTAACAGGAAAGACCATTACTCTGGAGGTTGAGCCCAGT 4014477 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | || || ||||| ||||| |||||||| || || |||||| Sbjct 4014476 GACACAATTGAGAATGTTAAGGCCAAAATCCAAGATAAGGAGGGTATCCCTCCAGATCAG 4014417 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 || || || || | | |||||||| || ||||||| | | |||| | |||||| Sbjct 4014416 CAGAGGCTGATCTTTGCTGGCAAACAGCTTGAAGATGGCCGTACCCTGTCTG--ATTACA 4014359 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 | || || ||||||||||| | ||||||||||| Sbjct 4014358 ACATCCAGAAAGAATCCACGCTGCATTTAGTGTT 4014325 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || ||||| ||||| | || || | || || || ||| Sbjct 4013396 ATGCAAATCTTTGTGAAGACCTTAACAGGAAAGACCATTACTCTGGAGGTTGAGCCCAGT 4013337 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| |||||| | || || ||||| ||||| |||||||| || || || ||| Sbjct 4013336 GATACCATCGAGAATGTTAAGGCCAAAATCCAGGATAAGGAGGGTATCCCTCCTGACCAG 4013277 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || || || | | ||| ||||| || ||||||| | | || ||||| || Sbjct 4013276 CAGAGGCTGATATTTGCCGGTAAACAGCTTGAAGATGGCCGCACCCTCTCAGATTATAAC 4013217 Query 25355 ATTCAAAAAGAATCCACCATTCAT 25378 || || |||||||||||| | ||| Sbjct 4013216 ATCCAGAAAGAATCCACCCTCCAT 4013193 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || ||||| ||||| | || || | || || || ||| Sbjct 4013624 ATGCAAATCTTTGTGAAGACCTTAACAGGAAAGACCATTACTCTGGAGGTTGAGCCCAGT 4013565 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| |||||| | || || ||||| ||||| |||||||| || || || ||| Sbjct 4013564 GATACCATCGAGAATGTTAAGGCCAAAATCCAGGATAAGGAGGGTATCCCTCCTGACCAG 4013505 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || || || | | |||||||| || ||||||| | | || ||||| || Sbjct 4013504 CAGAGGCTGATCTTTGCTGGCAAACAGCTTGAAGATGGCCGCACCCTCTCAGATTATAAC 4013445 Query 25355 ATTCAAAAAGAATCCACCATTCAT 25378 || || |||||||||||| | ||| Sbjct 4013444 ATCCAGAAAGAATCCACCTTGCAT 4013421 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA- 25233 ||||| | ||||||||||| || || || ||| | || || | || || | |||||| Sbjct 4014080 ATGCAGATATTTGTAAAAACCTTGACTGGCAAAACAATTACTCTGGAGGT-GGAGCCAAG 4014022 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || || |||||| || ||||| ||||| || || || || Sbjct 4014021 TGACACCATTGAAAATGTGAAGGCCAAAATTCAAGACAAAGAAGGTATTCCCCCAGACCA 4013962 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| || || || | | ||| ||||| || ||||||| | | || || ||||| Sbjct 4013961 GCAGAGGCTGATATTTGCCGGTAAACAGCTTGAAGATGGCCGCACCCTCTCAGACTACAA 4013902 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||| ||||||||| | ||| | || | || |||||||||| Sbjct 4013901 CATTCAAAAGGAATCCACCCTCCATCTTGTCCTCAGGCTGAGAGGAGG 4013854 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||||||||| || || |||||| | ||||| | ||||| || ||||| Sbjct 4013168 ATGCAAATCTTTGTAAAAACCTTGACTGGAAAAACAATCACCCTAGAAGTGGA-GCCAAG 4013110 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || || || ||| || ||||| ||||| || || || || Sbjct 4013109 TGACACCATTGAAAATGTGAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCAGACCA 4013050 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTAC 25351 ||||||||| || | | || ||||| || ||||||| | | ||||| ||||| Sbjct 4013049 GCAAAGACTGATCTTTGCAGGAAAACAGCTGGAAGATGGCCGTACCTTGTCA--GATTAT 4012992 Query 25352 AATATTCAAAAAGAATCCAC 25371 || || || |||||||| || Sbjct 4012991 AACATCCAGAAAGAATCTAC 4012972 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || | || || ||| | || || | || || || ||||| Sbjct 4013852 ATGCAAATATTTGTGAAGACCCTCACTGGCAAAACAATTACTCTGGAGGTGGA-GCCAAG 4013794 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || ||| | || || |||||| || ||||| ||||| || || ||||| Sbjct 4013793 TGACACAATTGAGAATGTGAAGGCCAAAATTCAAGACAAAGAAGGTATTCCTCCAGATCA 4013734 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351 ||||||| | |||| | ||| ||||| || ||||||| | | | | |||| |||| Sbjct 4013733 GCAAAGATTGATTTTTGCCGGGAAACAGCTGGAAGATGGTCGCACCCTATCAG--ATTAT 4013676 Query 25352 AATATTCAAAAAGAATCCACCATTCAT 25378 || || || |||||||||||| | ||| Sbjct 4013675 AACATCCAGAAAGAATCCACCTTGCAT 4013649 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||| |||||| | || || || | ||||| | || |||||| | | Sbjct 4014765 CATGCAAATATTTGTGAAAACACTTACTGGGAAGACCATCACTCTTGAGGTCGAACCAAG 4014706 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || || |||||| || ||||| || || || || || || Sbjct 4014705 TGACACCATTGAAAATGTCAAGGCTAAAATTCAAGACAAAGAAGGAATCCCACCTGACCA 4014646 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| ||| | || | | || |||||| | ||||||| | | | |||||||| Sbjct 4014645 GCAGAGATTAATCTTTGCTGGAAAACAATTGGAAGATGGCCGTACACTTTCTGATTACAA 4014586 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 |||||| ||||| || ||| | || ||||| || | | ||||| |||| Sbjct 4014585 TATTCAGAAAGAGTCAACCTTGCACTTAGTTTTGCGTCTTAGAGGTGGAA 4014536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444954262028160