Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq230 96.9 3e-15 seq425 91.5 1e-13 seq67 89.7 4e-13 >seq230 Length=1702269 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 || ||||| ||| | ||||||| || ||||| ||||| ||||||||||| || || ||| Sbjct 258076 CAGGAAGTACAAGTCACAGAAGCGCGCTGTTTCTATGGCTTTCAAATTGCAATGGAGAAT 258017 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 |||||| |||| |||||||| ||||| || | || || || |||||| Sbjct 258016 ATTCATCCGGAGATGTACAGCCTTCTCATTAACACATATATTAAAGAT 257969 >seq425 Length=1236905 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 || ||| | ||| | ||||||| || ||||| ||||| ||||||||||| || || || Sbjct 158830 CAGGAAATACAAGTCACAGAAGCGCGCTGTTTCTATGGATTTCAAATTGCAATGGAGAAC 158771 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||||||||||| |||||||| ||||| || || || || | |||||| Sbjct 158770 ATTCATTCGGAGATGTACAGCCTTCTCATTGACACATATGTTAAAGAT 158723 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 || ||| | ||| | ||||||| || ||||| ||||| ||||||||||| || || || Sbjct 160616 CAGGAAATACAAGTCACAGAAGCGCGCTGTTTCTATGGATTTCAAATTGCAATGGAGAAC 160557 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||||||||||| |||||||| ||||| || || || || | |||||| Sbjct 160556 ATTCATTCGGAGATGTACAGCCTTCTCATTGACACATATGTTAAAGAT 160509 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 || || ||||| | |||||| || || || || || ||||| ||||| ||||| || ||| Sbjct 157534 GTTGCATTTGCTGCTGTGGAGGGAATCTTTTTCTCTGGATCATTTGCAGCCATCTTCTGG 157475 Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGAT 44254 | ||||| ||||| ||||||||||| | || || || ||||| |||| || | ||| Sbjct 157474 CTGAAGAAGCGAGGGTTGATGCCTGGTCTCACATTCTCTAATGAACTAATCAGCAGAGAT 157415 Query 44255 GA 44256 || Sbjct 157414 GA 157413 >seq67 Length=2748889 Score = 89.7 bits (98), Expect = 4e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 || ||||| ||| | ||||||| | ||||| ||||| ||||||||||| ||||| || Sbjct 1060664 CAGGAAGTACAAGTCACAGAAGCGTGCTGTTTCTATGGCTTTCAAATTGCAATAGAGAAC 1060605 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTAC 44011 |||||| |||| ||||| || |||||||| || || ||| Sbjct 1060604 ATTCATCCGGAGATGTATAGCCTTCTGATTGACACATAC 1060566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397333989453940