Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq293 96.9 3e-15 seq13 95.1 1e-14 >seq293 Length=1515377 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 ||| | ||| | || || ||||| || || |||||||| | | |||| | ||||| Sbjct 419910 TACAAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTC 419851 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 ||||| || ||||| | || | | ||| || || || || | ||||||||||| Sbjct 419850 CAGCTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGTGGGATGCCCTCTTTATCTTG 419791 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||| ||||| | || | |||||| | ||||| || || || || || | || Sbjct 419790 TATCTTACATTTCACATTGTCAATAGTGTCAGATGCTTCCACCTCCAGGGTAATGGTCTT 419731 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGC 27253 || || ||||||||||||||||| ||||| ||||| Sbjct 419730 TCCAGTTAGAGTTTTCACAAAGATCTGCATGGCTGC 419695 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 ||| | ||| | || || ||||| || || |||||||| | | |||| | ||||| Sbjct 420366 TACAAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTC 420307 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 ||||| || ||||| | || | ||||| || || || || | ||||||||| || Sbjct 420306 CAGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCTGGTGGGATACCCTCTTTGTCCTG 420247 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| ||||| | || | |||||| ||| ||||| || || || || | || Sbjct 420246 GATCTTACATTTCACATTGTCAATAGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTT 420187 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||| || || || ||||||||||| |||||| Sbjct 420186 GCCTGTGAGGGTCTTCACAAAGATCTGCATA 420156 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| ||||| || || |||||||| | |||| | ||||| |||||||| || Sbjct 420581 GTAGATTCTTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCATCTTCCAGCTGTTTGCCA 420522 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || | ||||| || || || || | ||||||||| || |||||| ||| Sbjct 420521 GCAAAGATCAATCGCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGGATCTTTGCTTTG 420462 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | |||||| ||| ||||| || || || || | ||||| || || || Sbjct 420461 ACATTCTCAATAGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCTGTGAGGGTC 420402 Query 27231 TTCACAAAGATTTGCATA 27248 ||||||||||| |||||| Sbjct 420401 TTCACAAAGATCTGCATA 420384 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 ||| | ||| | || || ||||| || || |||||||| | | |||| | ||||| Sbjct 420138 TACAAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTC 420079 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 ||||| || ||||| | || | | ||| || || || || | ||||||||||| Sbjct 420078 CAGCTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGTGGGATGCCCTCTTTATCTTG 420019 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||| ||||| | || | |||||| ||| ||||| || || || || | || Sbjct 420018 TATCTTACATTTCACATTGTCAATAGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTT 419959 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||| || || || ||||||||||| |||||| Sbjct 419958 GCCTGTGAGGGTCTTCACAAAGATCTGCATA 419928 >seq13 Length=4293860 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| || ||||| | ||| || ||||| || || ||||| || || | | || | Sbjct 4014322 CGCAACACTAAATGCAGCGTGGATTCTTTCTGGATGTTGTAATCAGACAGGGTACGGCCA 4014381 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| |||||||| || || | || || | ||| ||||| || || | |||||| ||| Sbjct 4014382 TCTTCAAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGGATACCCTCCTTA 4014441 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| ||| || | | || | ||||| ||| ||||| || ||||| || Sbjct 4014442 TCTTGGATTTTGGCCTTAACATTCTCAATTGTGTCACTGGGCTCAACCTCCAGAGTAATG 4014501 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || | || ||||||||||||||||| Sbjct 4014502 GTCTTTCCTGTTAAGGTCTTCACAAAGATTTGCAT 4014536 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || |||||||| |||||||| | | |||| | ||||| |||||||||||| Sbjct 4013884 GTGGATTCCTTTTGAATGTTGTAGTCTGAGAGGGTGCGGCCATCTTCAAGCTGTTTACCG 4013943 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || || | ||| || || || || | ||| ||||| || || ||| ||| Sbjct 4013944 GCAAATATCAGCCTCTGCTGGTCTGGGGGAATACCTTCTTTGTCTTGAATTTTGGCCTTC 4014003 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | |||| | ||||| | | || || || ||||| || | |||||| |||| ||| Sbjct 4014004 ACATTTTCAATGGTGTCACTTGGCTCCACCTCCAGAGTAATTGTTTTGCCAGTCAAGGTT 4014063 Query 27231 TTCACAAAGATTTGCAT 27247 || ||||| || ||||| Sbjct 4014064 TTTACAAATATCTGCAT 4014080 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || ||||| || |||||||| | | |||| | ||||| Sbjct 4014100 ACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCTGAGAGGGTGCGACCATCTTCA 4014159 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 |||||||||||||| | || || | ||| || || || || | ||| ||||| || Sbjct 4014160 AGCTGTTTACCGGCAAATATCAGCCTCTGCTGGTCTGGGGGAATACCTTCTTTGTCTTGA 4014219 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || ||| |||| | || | ||||| | | || || || ||||| || | |||| Sbjct 4014220 ATTTTGGCCTTCACATTCTCAATTGTGTCACTTGGCTCCACCTCCAGAGTAATTGTTTTG 4014279 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || |||||||| || |||||| Sbjct 4014280 CCAGTGAGGGTCTTCACAAAAATCTGCATA 4014309 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| || | ||| |||| || | || | ||||| ||||| || || || || || Sbjct 4012941 GCCACCCCTCAAGCGCAGGACAAGGTGCAGAGTAGATTCTTTCTGGATGTTATAATCTGA 4013000 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || | | || | ||||| |||||||| || || | || || | || || || || || Sbjct 4013001 CAAGGTACGGCCATCTTCCAGCTGTTTTCCTGCAAAGATCAGTCTTTGCTGGTCTGGGGG 4013060 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||| ||||| || |||||| |||| |||| | ||||| | | || || Sbjct 4013061 AATACCTTCTTTGTCTTGAATCTTGGCCTTCACATTTTCAATGGTGTCACTTGGCTCCAC 4013120 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||||| || || | ||| || |||| ||||| |||||||||||||| Sbjct 4013121 TTCTAGGGTGATTGTTTTTCCAGTCAAGGTTTTTACAAAGATTTGCAT 4013168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424803954169056