Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq16 84.2 2e-11 seq3383 82.4 8e-11 >seq16 Length=4132212 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 || |||||||||||||| |||||||| || |||| |||||||| | || ||| | || Sbjct 2457948 GTAGAAGGAATCTTCTTTTCTGGCTCCTTTGCTGCTGTTTTCTGGTTGAAGAAGAGAGGT 2457889 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 || ||||| || || | |||||||| ||||| || ||| ||||||| Sbjct 2457888 CTGATGCCCGGTCTCACCTTCTCCAATGAGCTCATCAGCCGAGACGAGG 2457840 >seq3383 Length=54064 Score = 82.4 bits (90), Expect = 8e-11 Identities = 129/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 78221 CCTTCTTCCATCCGTACAGGTGCATACTCGACAGCTTGGCCAGACTCGGGTTCTCCAT-G 78279 ||| |||||| || || | ||||||||||| |||||| || | | ||||| || | Sbjct 43355 CCTGCTTCCACCCATAGAAGTGCATACTCGTCAGCTTC-CCGTAGTTTGGTTCGGCAACG 43297 Query 78280 AAGATGTTGAGCGACTGGGACTGGTCGATGTACGCACCGCGGTCGGCCGCCATGTCGATG 78339 |||||||||||||||| |||||| ||| | || || | ||| || ||||| | |||| Sbjct 43296 TGGATGTTGAGCGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCAGCGGCCATCTTGATG 43237 Query 78340 ACCGACTTTTGCGGAATCTCCCAGATGGTCCGGTAAATGGCCTTCAGCTCTTCCTGGATG 78399 | | || || | |||||||| | |||| || | ||||||| || || |||| Sbjct 43236 ATGGTTTTCTGAGAGATCTCCCACACGGTCTTATAGAGTTCCTTCAGGTCAGCCGGGATA 43177 Query 78400 TC 78401 || Sbjct 43176 TC 43175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548352096966720