Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq1240 125 6e-24 >seq1240 Length=519700 Score = 125 bits (138), Expect = 6e-24 Identities = 134/173 (77%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 30224 ATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCT 30283 ||||| |||||||||| || ||||||||||| || || || || || ||||| |||||| Sbjct 50311 ATGTCTTTGTACTCTGCACCAAAATGCCTCCATTGAAAACCATATACAGGTCCAAGGTCT 50370 Query 30284 CCCTCTTCCCTGTGCT-CGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 || || |||| ||| | ||||| ||| ||||| || |||||||| || || || || Sbjct 50371 CCTTCCTCCC-GTGATGTAAAGCCTTGCTTATCCAAGAACTCTCTGGAGCCATTTGCATC 50429 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30395 |||||| || ||||| || ||||| |||||||| | ||||| || || |||| Sbjct 50430 CCAGATTTTCACCCCTTTTTCAGAAAGCTCTTTTGCATTTGTAGAACC-CTGA 50481 Score = 93.3 bits (102), Expect = 3e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || || |||||||| ||||| || || | | || || ||||| ||||| || || Sbjct 48913 AGTCCTGTAACGTGAGCGATCATATAGGTTAATAAAGCATAACTGGCTATGTTGAATGGC 48972 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || ||||| || ||||| |||||||| ||||||||||| | || || | Sbjct 48973 ACTCCTAGGCCCATATCTCCCGATCTCTGGTATAGCTGACACGACAATTCATTGTTGAGA 49032 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 || || ||||| || | || ||||| || ||||| ||||| || Sbjct 49033 ACATAGAACTGGCAAAGAGCATGGCATGGGGGAAGTGCCATCAG 49076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406185671341296