Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq13 127 1e-24 seq293 95.1 8e-15 >seq13 Length=4293860 Score = 127 bits (140), Expect = 1e-24 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | || | ||||| ||||||||| |||||||| ||||| || ||||| Sbjct 4014082 CCACCTCTTAAGCGAAGAACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCTGAG 4014141 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | |||||||| ||||||||||||||||| | | ||| ||||| || || Sbjct 4014142 AGGGTGCGACCATCTTCAAGCTGTTTACCGGCAAATATCAGCCTCTGCTGGTCTGGGGGA 4014201 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGT--CTTCGCTCTCC 34656 | || || |||||| ||| ||| | || || | |||||||| ||| | |||| Sbjct 4014202 ATACCTTCTTTGTCT-TGAATTTTGGCCTTCACATTCTCAATTGTGTCACTTGG--CTCC 4014258 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || |||| || || ||||| || || | || ||||||||||||||||| Sbjct 4014259 ACCTCCAGAGTAATTGTTTTGCCAGTGAGGGTCTTCACAAAAATCTGCAT 4014308 Score = 118 bits (130), Expect = 7e-22 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || | | || | |||||| ||| |||||||||||||| || ||||| Sbjct 4013854 CCTCCTCTCAGCCTGAGGACAAGATGGAGGGTGGATTCCTTTTGAATGTTGTAGTCTGAG 4013913 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | |||||||| ||||||||||||||||| | | ||| ||||| || || Sbjct 4013914 AGGGTGCGGCCATCTTCAAGCTGTTTACCGGCAAATATCAGCCTCTGCTGGTCTGGGGGA 4013973 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGT--CTTCGCTCTCC 34656 | || || |||||| ||| ||| | || || | ||| |||| ||| | |||| Sbjct 4013974 ATACCTTCTTTGTCT-TGAATTTTGGCCTTCACATTTTCAATGGTGTCACTTGG--CTCC 4014030 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || |||| || || ||||| || || || ||||| ||||| |||||||| Sbjct 4014031 ACCTCCAGAGTAATTGTTTTGCCAGTCAAGGTTTTTACAAATATCTGCAT 4014080 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | || | |||||| ||| || || || |||||||||||||| Sbjct 4013170 CCACCTCTTAGACGGAGAACAAGATGGAGGGTGGATTCTTTCTGGATGTTATAATCTGAG 4013229 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | |||||||| ||||||||||||||||| | | ||| ||||| || || Sbjct 4013230 AGGGTGCGGCCATCTTCAAGCTGTTTACCGGCAAATATCAGCCTCTGCTGGTCAGGAGGG 4013289 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||| || ||| ||| | ||||| | || || || | ||| || Sbjct 4013290 ATACCCTCCTTATCCTGGAT-TTTGGCCTTAACATTCTCGATGGTATCACTGGGCTCAAC 4013348 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || || ||||| || |||||||| || ||||| Sbjct 4013349 CTCCAGAGTAATGGTCTTTCCTGTTAAGGTCTTCACAAAGATTTGCAT 4013396 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || ||||||||||| ||||| || ||| || || || ||||| ||||| || Sbjct 4014310 CCACCCCTCAGACGCAACACTAAATGCAGCGTGGATTCTTTCTGGATGTTGTAATCAGAC 4014369 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | |||||||| ||||| || ||||| || | | ||| || || || || Sbjct 4014370 AGGGTACGGCCATCTTCAAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGG 4014429 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||| ||| ||| ||| | ||||| | ||||||||| | ||| || Sbjct 4014430 ATACCCTCCTTATCTTGGAT-TTTGGCCTTAACATTCTCAATTGTGTCACTGGGCTCAAC 4014488 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || || ||||| || |||||||| || ||||| Sbjct 4014489 CTCCAGAGTAATGGTCTTTCCTGTTAAGGTCTTCACAAAGATTTGCAT 4014536 Score = 104 bits (114), Expect = 1e-17 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||||||||||||| || || || | || ||| || ||||| || ||||| ||| Sbjct 4014538 CCACCTCTAAGACGCAAAACTAAGTGCAAGGTTGACTCTTTCTGAATATTGTAATCAGAA 4014597 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | ||||| | |||||| || ||||| ||||| | ||| ||||| || || Sbjct 4014598 AGTGTACGGCCATCTTCCAATTGTTTTCCAGCAAAGATTAATCTCTGCTGGTCAGGTGGG 4014657 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTC-TTCGCTCTCCA 34657 | ||| || |||||| ||| ||| | || || | ||| ||||| | | | || | Sbjct 4014658 ATTCCTTCTTTGTCT-TGAATTTTAGCCTTGACATTTTCAATGGTGTCACTTGGT-TCGA 4014715 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || | || || || || || || | ||||||||||| || |||||| Sbjct 4014716 CCTCAAGAGTGATGGTCTTCCCAGTAAGTGTTTTCACAAATATTTGCATG 4014765 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || ||||| | || | ||| | ||| || || || |||||||||||||| Sbjct 4013626 CCACCCCTCAGACGAAGGACAAGATGCAAGGTGGATTCTTTCTGGATGTTATAATCTGAT 4013685 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || ||||| |||||||| || || | || || || || || Sbjct 4013686 AGGGTGCGACCATCTTCCAGCTGTTTCCCGGCAAAAATCAATCTTTGCTGATCTGGAGGA 4013745 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGT--CTTCGCTCTCC 34656 | || || |||||| ||| ||| | || || | |||||||| ||| | |||| Sbjct 4013746 ATACCTTCTTTGTCT-TGAATTTTGGCCTTCACATTCTCAATTGTGTCACTTGG--CTCC 4013802 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || |||| || || ||||| || || | || |||||||| || ||||| Sbjct 4013803 ACCTCCAGAGTAATTGTTTTGCCAGTGAGGGTCTTCACAAATATTTGCAT 4013852 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || ||||| | || | ||| | ||| || || || |||||||||||||| Sbjct 4013398 CCACCCCTCAGACGAAGGACAAGATGCAAGGTGGATTCTTTCTGGATGTTATAATCTGAG 4013457 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | |||||||| ||||| || ||||| || | | ||| ||||| || || Sbjct 4013458 AGGGTGCGGCCATCTTCAAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 4013517 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||| || ||| ||| | ||||| | || || || | ||| || Sbjct 4013518 ATACCCTCCTTATCCTGGAT-TTTGGCCTTAACATTCTCGATGGTATCACTGGGCTCAAC 4013576 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || || ||||| || |||||||| || ||||| Sbjct 4013577 CTCCAGAGTAATGGTCTTTCCTGTTAAGGTCTTCACAAAGATTTGCAT 4013624 >seq293 Length=1515377 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | || | ||| || ||| || || || ||||| || || ||| Sbjct 419927 CCACCTCTCAGACGGAGTACAAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAA 419868 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || || || |||||||| || || | ||| ||||| || || Sbjct 419867 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGTGGG 419808 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTC-GCTCTCCAC 34658 | ||||| || ||| ||||| ||| | ||| ||||| ||| ||||| Sbjct 419807 ATGCCCTCTTTATCTTGTATCTTACATTTCACATTGTCAATAGTGTCAGATGCT-TCCAC 419749 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| ||| || || || || |||| ||||||||||| ||||||||| Sbjct 419748 CTCCAGGGTAATGGTCTTTCCAGTTAGAGTTTTCACAAAGATCTGCATG 419700 Score = 91.5 bits (100), Expect = 9e-14 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||||||||| | || | || || ||| || || || ||||| || || || Sbjct 420840 GCCACCTCTAAGACGGAGTACAAGGTGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 420781 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 |||||| || | ||||| || || || || ||||| || || | ||| ||||| || || Sbjct 420780 AAGTGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAAATCAATCTCTGCTGGTCTGGTGG 420721 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||||| ||||| |||||| ||| | ||| ||||| || ||| || Sbjct 420720 GATACCCTCTTTGTCCTGGATCTTACATTTCACATTGTCAATAGTGTCACTGCACTCAAC 420661 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || || || | |||||||| || |||||||| Sbjct 420660 CTCAAGGGTGATGGTCTTGCCTGTGAGGGTTTTCACGAAGATCTGCAT 420613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314632984700804