Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1240 116 3e-21 >seq1240 Length=519700 Score = 116 bits (128), Expect = 3e-21 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 || ||||||||||| || || | | ||| ||||| || |||||||| ||||| |||| Sbjct 48922 ACGTGAGCGATCATATAGGTTAATAAAGCATAACTGGCTATGTTGAATGGCACTCCTAGG 48981 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 ||||| |||||||||| || || ||||| || |||| || || || ||||| Sbjct 48982 CCCATATCTCCCGATCTCTGGTATAGCTGACACGACAATTCATTGTTGAGAACATAGAAC 49041 Query 6737 TGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||| || | ||||| ||||| || ||||||||||||||||| Sbjct 49042 TGGCAAAGAGCATGGCATGGGGGAAGTGCCATCAGAGGGAGATC 49085 Score = 116 bits (128), Expect = 3e-21 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||||||||||||||| || ||||| ||||| | || ||||| ||||| || || Sbjct 49085 GATCTCCCTCTGATGGCACTTCCCCCATGCCATGCTCTTTGCCAGTTCTATGTTCTCAAC 49026 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || |||| || ||||| || || |||||||||| ||||| |||| ||||| ||| Sbjct 49025 AATGAATTGTCGTGTCAGCTATACCAGAGATCGGGAGATATGGGCCTAGGAGTGCCATTC 48966 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGT 34728 ||||| || ||||| ||| | | || || ||||||||||| || Sbjct 48965 AACATAGCCAGTTATGCTTTATTAACCTATATGATCGCTCACGT 48922 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 7127 TCGCCCCGAAGGTTGTATCGGGCCTGTGTGCCGAACACGGAGAGGGTCCCCGTCCCGGTC 7186 || ||||| ||| | |||| ||| || |||||||||| |||| |||||| || |||||| Sbjct 56189 TCACCCCGTAGGCTATATCTGGCTTGCATGCCGAACACAGAGATGGTCCCAGTTCCGGTC 56248 Query 7187 CGGTCCCCCTTCCGGTAGCCCTCCCTGAGGATCCGCGCCACCTGATACAGATACTG 7242 |||||| |||| ||||| ||| |||||| | | ||||| ||||||||| Sbjct 56249 CGGTCCTCCTTGCGGTATCCCCGGTAGAGGATGTGTCGGATCTGATCCAGATACTG 56304 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 34103 CAGTATCTGTATCAGGTGGCGCGGATCCTCAGGGAGGGCTACCGGAAGGGGGACCGGACC 34162 ||||||||| ||||| | | |||||| ||| ||||| |||| |||||||||| Sbjct 56304 CAGTATCTGGATCAGATCCGACACATCCTCTACCGGGGATACCGCAAGGAGGACCGGACC 56245 Query 34163 GGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTTCGGGGCGA 34218 || || |||||| |||| |||||||||| || ||| |||| | ||| ||||| || Sbjct 56244 GGAACTGGGACCATCTCTGTGTTCGGCATGCAAGCCAGATATAGCCTACGGGGTGA 56189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448121264583360