Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq13 104 2e-17 >seq13 Length=4293860 Score = 104 bits (114), Expect = 2e-17 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||||||||| ||||||||||| || || |||| |||||| | Sbjct 4014764 ATGCAAATATTTGTGAAAACACTTACTGGGAAGACCATCACTCTTGAGGTCGAACCAAGT 4014705 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| ||||| ||||| ||||||||||| | || || | Sbjct 4014704 GACACCATTGAAAAT--GTCAAGGCTAAAATTCAAGACAAAGAAGGAATCCCACCTGACC 4014647 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| | ||||| ||||| |||||||||||||| || | || | | || ||||||| Sbjct 4014646 AGCAGAGATTAATCTTTGCTGGAAAACAATTGGAAGATGGCCGTACACTTTCTGATTACA 4014587 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGT 28005 | || || |||||| || ||||| || ||||||||| Sbjct 4014586 ATATTCAGAAAGAGTCAACCTTGCACTTAGTTTTGCGT 4014549 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGA---AAGC 27846 |||||||| |||||||| || || ||||| ||| ||||| | || || || ||| Sbjct 4013852 ATGCAAATATTTGTGAAGACCCTCACTGGCAAAACAATTACTCTGGAGGTGGAGCCAAGT 4013793 Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | ||| || || ||||| |||||||||||| |||| || Sbjct 4013792 GAC-ACAATTGAGAAT--GTGAAGGCCAAAATTCAAGACAAAGAAGGTATTCCTCCAGAT 4013736 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||| | || ||||||||||| ||||| |||| || | |||| | | || ||||| Sbjct 4013735 CAGCAAAGATTGATTTTTGCCGGGAAACAGCTGGAAGATGGTCGCACCCTATCAGATTAT 4013676 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| ||||| ||| |||||| | || | ||| || | || || Sbjct 4013675 AACATCCAGAAAGAATCCACCTTGCATCTTGTCCTTCGTCTGAGGGGTGG 4013626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355753157805276