Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq13 95.1 1e-14 seq293 87.8 2e-12 >seq13 Length=4293860 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||||| || | || | ||| || ||| ||||| || || |||||||| | Sbjct 4013170 CCACCTCTTAGACGGAGAACAAGATGGAGGGTGGATTCTTTCTGGATGTTATAATCTGAG 4013229 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || ||||||||||| || |||||||| || | ||||||||| | || Sbjct 4013230 AGGGTGCGGCCATCTTCAAGCTGTTTACCGGCAAATATCAGCCTCTGCTGGTCAGGAGGG 4013289 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||| || ||| |||||| || | || | | ||||| || | ||| || Sbjct 4013290 ATACCCTCCTTATCCTGGATTTTGGCCTTAACATTCTCGATGGTATCACTGGGCTCAACC 4013349 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || || | ||||| || | || || |||||||||||||| Sbjct 4013350 TCCAGAGTAATGGTCTTTCCTGTTAAGGTCTTCACAAAGATTTGCAT 4013396 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 39045 AAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTAT 39104 |||| | | || || ||||||||||| | ||||| || || ||| || ||||| || Sbjct 4014069 AAATATCTGCATTCCACCTCTTAAGCGAAGAACCAAGTGGAGAGTGGATTCCTTTTGGAT 4014128 Query 39105 ATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTG 39164 || || || | || || || | || ||||||||||| || |||||||| || | ||| Sbjct 4014129 GTTGTAGTCTGAGAGGGTGCGACCATCTTCAAGCTGTTTACCGGCAAATATCAGCCTCTG 4014188 Query 39165 CTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC 39224 |||||| | ||| | | |||||||| ||||| || | || | | || || Sbjct 4014189 CTGGTCTGGGGGAATACCTTCTTTGTCTTGAATTTTGGCCTTCACATTCTCAATTGTGTC 4014248 Query 39225 GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | |||||| |||| || || |||| || || || || || ||||| || ||||| Sbjct 4014249 ACTTGGCTCCACCTCCAGAGTAATTGTTTTGCCAGTGAGGGTCTTCACAAAAATCTGCAT 4014308 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 ||||| || || |||||||| | || || || | || |||||||||||||| ||||| Sbjct 4013434 TCTTTCTGGATGTTATAATCTGAGAGGGTGCGGCCATCTTCAAGCTGTTTGCCAGCAAAG 4013493 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || || | ||||||||| | || | | ||| || ||| |||||| || | || Sbjct 4013494 ATCAGCCTCTGCTGGTCAGGAGGGATACCCTCCTTATCCTGGATTTTGGCCTTAACATTC 4013553 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 | | ||||| || | ||| || |||| || || | ||||| || | || || ||| Sbjct 4013554 TCGATGGTATCACTGGGCTCAACCTCCAGAGTAATGGTCTTTCCTGTTAAGGTCTTCACA 4013613 Query 39274 AAGATTTGCAT 39284 ||||||||||| Sbjct 4013614 AAGATTTGCAT 4013624 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || ||||| ||||| |||||| ||||| || || || ||||| | || || || | Sbjct 4014322 CGCAACACTAAATGCAGCGTGGATTCTTTCTGGATGTTGTAATCAGACAGGGTACGGCCA 4014381 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || |||||||||||||| ||||| || || | |||||| || | || | | ||| || Sbjct 4014382 TCTTCAAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGGATACCCTCCTTA 4014441 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 || |||||| || | || | | || || || | ||| || |||| || || Sbjct 4014442 TCTTGGATTTTGGCCTTAACATTCTCAATTGTGTCACTGGGCTCAACCTCCAGAGTAATG 4014501 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||| || | || || |||||||||||||| Sbjct 4014502 GTCTTTCCTGTTAAGGTCTTCACAAAGATTTGCAT 4014536 >seq293 Length=1515377 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 ||||| || || || || || | |||||| || | || || ||||||||||| ||||| Sbjct 420575 TCTTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAG 420516 Query 39154 ATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || | ||||||||||| |||||| | | ||||||||| ||| || ||||| | Sbjct 420515 ATCAATCGCTGCTGGTCTGGTGGG-ATACCCTCTTTGTCTTGGATCTTTGCTTTGACATT 420457 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | | || || || | ||| || || | ||||| | || || || || || || || Sbjct 420456 CTCAATAGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTCAC 420397 Query 39273 AAAGATTTGCAT 39284 |||||| ||||| Sbjct 420396 AAAGATCTGCAT 420385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429413738628644