Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq67 129 8e-25 seq935 96.9 5e-15 seq3383 93.3 6e-14 seq425 93.3 6e-14 seq230 89.7 7e-13 >seq67 Length=2748889 Score = 129 bits (142), Expect = 8e-25 Identities = 162/221 (73%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 48328 GTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGt 48387 ||| ||| ||||||||||| || |||||||||| ||||| || |||| || | || | Sbjct 1060479 GTGTCCATTCAGCCTTCTTTTTCACACAAGGCAGAGTTTCAATTACATTGAACAAGAACT 1060538 Query 48388 ttttttCATTGCTATCTTTAAC-----GTAAGTATCTATTAAAAGACTATACATTTCGGA 48442 | | || ||| |||||||| ||| || || || | ||| |||||||| || | Sbjct 1060539 TCCTCTCCTTGGGATCTTTAAAACCCAGTATGTGTCAATCAGAAGGCTATACATCTCCGG 1060598 Query 48443 GTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTAC 48502 ||||| || || ||||| || ||||| || || ||||| | ||||||||||| ||||| Sbjct 1060599 ATGAATGTTCTCTATTGCAATTTGAAAGCCATAGAAACAGCACGCTTCTGTGACTTGTAC 1060658 Query 48503 CTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTC 48543 ||| || || |||||| |||| |||| ||||| |||| Sbjct 1060659 TTCCTGACTGAAACGTTCAACCAAGTTCTTGTTTAC-ATTC 1060698 >seq935 Length=692996 Score = 96.9 bits (106), Expect = 5e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 171527 ATGTACGAGCCCGGAAAACGTAGATGGCTTAAAATAAAGAGAGACTACTTGAACGAGGGT 171586 ||||| ||||| ||||| ||| ||||| || | || | || |||||||| || ||| Sbjct 235208 ATGTATGAGCCAGGAAAGCGTCACTGGCTGAAGGTGAAAAAGGATTACTTGAATGAAGGT 235149 Query 171587 TCGATGGCGGATTCTGCAGATCTAGTAGTATTGGGGGCATATTATGGAAAAGGAACAAAG 171646 | |||||||| |||| ||||| | ||| ||||| |||| ||||||||||||| |||| Sbjct 235148 GCTATGGCGGACACTGCTGATCTTGCAGTTTTGGGAGCATTTTATGGAAAAGGAGCAAAT 235089 Query 171647 GGT 171649 ||| Sbjct 235088 GGT 235086 >seq3383 Length=54064 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||| || || |||| ||||| || ||||| || || ||||| || || || | |||| Sbjct 41272 TGAAACTCCCCGGACAGGACTCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCAATAGAT 41213 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 |||||||| |||| || || || || || ||||| ||||| || || |||| ||||| Sbjct 41212 TCATTGTTCCCCAGGATCTGTGCGGTGGACGCAGTGGGCATCGGAGCGACCAGCAAACTG 41153 Query 77247 TTTCTGAGACCATG 77260 || || | |||||| Sbjct 41152 TTCCTAATACCATG 41139 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 || |||| |||||| ||||| || ||||| | ||| || ||||||| || | ||| Sbjct 36175 ACACGTTCCATAAACAGATCCGGGATCCACAAGGCATAGAAGAGATCTCTGGCCCGTTGT 36116 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 || || || |||||||||||||| ||||| || ||||| | | ||| | ||||| || Sbjct 36115 TCCTCCTTCCCTGTATTCTTTTTCAGATCCAGGAACTCAAACACATCGTAGTGCCAAGGC 36056 Query 78123 TCTAGATATATTGCCATAACTCCAGG 78148 || | || ||||| | ||||||| Sbjct 36055 TCCAAGTAGATTGCAAATGCTCCAGG 36030 >seq425 Length=1236905 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| || |||| ||| ||||| ||||||||||| ||||| | || || || || Sbjct 157413 TCATCTCTGCTGATTAGTTCATTAGAGAATGTGAGACCAGGCATCAACCCTCGCTTCTTC 157472 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| || || || || || |||||||| || || || || || || || |||||||| Sbjct 157473 AGCCAGAAGATGGCTGCAAATGATCCAGAGAAAAAGATTCCCTCCACAGCAGCAAATGC 157531 Score = 89.7 bits (98), Expect = 7e-13 Identities = 114/154 (74%), Gaps = 6/154 (4%) Strand=Plus/Plus Query 47787 ATGGTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCT----TCTTGAGACATAA 47841 || |||| |||| ||||| |||||| || || | || || ||||| ||||| | Sbjct 155298 ATAGTTCATTTAGAAGTCCGCATCTAGAGTGAATTTATGGTCCGATGTCTTG-GACATGA 155356 Query 47842 CTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATG 47901 | ||||| || ||||||||||| || ||||| || ||||| || || ||||||| || Sbjct 155357 CCCCCATCTTCTGATATTCACCAACTTTCTTCTCAAAGAAATTGGTCTTCCCTTCCAGTG 155416 Query 47902 ATATATTTTCCATAAAATCAAATGGATTAACTGC 47935 | || || ||||| || ||||||||||| |||| Sbjct 155417 AAATGTTCTCCATGAAGTCAAATGGATTTTCTGC 155450 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 48393 tCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTT 48452 || ||| ||||||||| || || || || | ||| || ||||| || || ||||| || Sbjct 158715 TCTTTGGGATCTTTAACATATGTGTCAATGAGAAGGCTGTACATCTCCGAATGAATGTTC 158774 Query 48453 TCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTA 48501 || ||||| || |||||||| || ||||| | ||||||||||| |||| Sbjct 158775 TCCATTGCAATTTGAAATCCATAGAAACAGCGCGCTTCTGTGACTTGTA 158823 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 48393 tCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTT 48452 || ||| ||||||||| || || || || | ||| || ||||| || || ||||| || Sbjct 160501 TCTTTGGGATCTTTAACATATGTGTCAATGAGAAGGCTGTACATCTCCGAATGAATGTTC 160560 Query 48453 TCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTA 48501 || ||||| || |||||||| || ||||| | ||||||||||| |||| Sbjct 160561 TCCATTGCAATTTGAAATCCATAGAAACAGCGCGCTTCTGTGACTTGTA 160609 >seq230 Length=1702269 Score = 89.7 bits (98), Expect = 7e-13 Identities = 111/151 (74%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 48393 tCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTT 48452 || ||| |||||||| || || | || | ||| || ||||| || | |||||||| Sbjct 257961 TCTTTGGGATCTTTAATATATGTGTTAATGAGAAGGCTGTACATCTCCGGATGAATATTC 258020 Query 48453 TCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAA 48512 || ||||| || ||||| || || ||||| | ||||||||||| ||||| ||| || Sbjct 258021 TCCATTGCAATTTGAAAGCCATAGAAACAGCGCGCTTCTGTGACTTGTACTTCCTGACTG 258080 Query 48513 AATCGTTCAGCCAAATTCTCATTTACTATTC 48543 || || ||| |||| |||| ||||| |||| Sbjct 258081 AAACGCTCAACCAAGTTCTTGTTTAC-ATTC 258110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694450083528320