Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq935 100 4e-16 seq3383 96.9 5e-15 seq425 84.2 3e-11 >seq935 Length=692996 Score = 100 bits (110), Expect = 4e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 170095 ATATATGAGCCAGGAAAACGTAGATGGCTTAAAATAAAGAGAGACTACTTGAATGAGGGT 170154 || |||||||||||||| ||| ||||| || | || | || ||||||||||| ||| Sbjct 235208 ATGTATGAGCCAGGAAAGCGTCACTGGCTGAAGGTGAAAAAGGATTACTTGAATGAAGGT 235149 Query 170155 TCGATGGCGGATTCTGCAGATTTAGTAGTATTGGGGGCATATTATGGAAAAGGAACAAAG 170214 | |||||||| |||| ||| | | ||| ||||| |||| ||||||||||||| |||| Sbjct 235148 GCTATGGCGGACACTGCTGATCTTGCAGTTTTGGGAGCATTTTATGGAAAAGGAGCAAAT 235089 Query 170215 GGT 170217 ||| Sbjct 235088 GGT 235086 >seq3383 Length=54064 Score = 96.9 bits (106), Expect = 5e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| |||| || ||||| || || ||||||||||| ||||| || |||||| Sbjct 30701 GTGCCGGCATTGAACAGGGTGGGAGAGGCGTGTGTGAACCATTTCTCAGACAGCAGATTG 30642 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || ||||| || | |||||||| || || || ||||| |||| || | ||| | | Sbjct 30641 TACGTTTCTATGGCCGCTTCTATGTCGTTTTTGTGGATTCCGACAGACACCCTCATGAGC 30582 Query 77114 ATATGCTGAGGTCGTTCT 77131 || ||||| || |||||| Sbjct 30581 ATGTGCTGGGGACGTTCT 30564 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||| || || |||| ||||| || ||||| || || ||||| || || || | |||| Sbjct 41272 TGAAACTCCCCGGACAGGACTCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCAATAGAT 41213 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 |||||||| |||| || || || || || ||||| ||||| || || |||| ||||| Sbjct 41212 TCATTGTTCCCCAGGATCTGTGCGGTGGACGCAGTGGGCATCGGAGCGACCAGCAAACTG 41153 Query 75842 TTTCTGAGACCATG 75855 || || | |||||| Sbjct 41152 TTCCTAATACCATG 41139 >seq425 Length=1236905 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 ||||||||||||||| || || | ||| || ||||| || ||||||||||| || || || Sbjct 158723 ATCTTTAACATATGTGTCAATGAGAAGGCTGTACATCTCCGAATGAATGTTCTCCATTGC 158782 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTA 46990 || |||||||| || ||||| | ||||| || | |||| Sbjct 158783 AATTTGAAATCCATAGAAACAGCGCGCTTCTGTGACTTGTA 158823 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 ||||||||||||||| || || | ||| || ||||| || ||||||||||| || || || Sbjct 160509 ATCTTTAACATATGTGTCAATGAGAAGGCTGTACATCTCCGAATGAATGTTCTCCATTGC 160568 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTA 46990 || |||||||| || ||||| | ||||| || | |||| Sbjct 160569 AATTTGAAATCCATAGAAACAGCGCGCTTCTGTGACTTGTA 160609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712709932604160