Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq13 98.7 8e-16 >seq13 Length=4293860 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||| ||||| ||||| ||||| || ||||| || ||| | ||| ||| || || Sbjct 4013169 AATGCAAATCTTTGTAAAAACCTTGACTGGAAAAACAATCACCCTAGAAGTGGAGCCAAG 4013110 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 || | ||| | || || || ||| ||||||||||| ||||| || || Sbjct 4013109 TGACACCATTGAAAATGTGAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCAGACCA 4013050 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 ||||| || || | ||| || ||||| |||||||| || || | |||||||| Sbjct 4013049 GCAAAGACTGATCTTTGCAGGAAAACAGCTGGAAGATGGCCGTACCTTGTCAGATTATAA 4012990 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111327 || || ||||||||||| || || | || |||| || | |||||| Sbjct 4012989 CATCCAGAAAGAATCTACTCTGCACCTTGTCCTGCGCTTGAGGGGTGGC 4012941 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||| ||||| || || || || || || |||||||| |||| || ||||| Sbjct 4014537 AATGCAAATCTTTGTGAAGACCTTAACAGGAAAGACCATTACTCTGGAGGTTGAGCCCAG 4014478 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACA-AAGAAGGCGTTCCCGTC-GAT 111216 || | ||| | || || ||||| || | | ||| ||| |||| | ||| Sbjct 4014477 TGACACAATTGAGAATGTTAAGGCCAAAAT--CCAAGATAAGGAGGGTATCCCTCCAGAT 4014420 Query 111217 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111276 || || ||||| || | ||| |||||||| | |||||| || || | ||||| Sbjct 4014419 CAGCAGAGGCTGATCTTTGCTGGCAAACAGCTTGAAGATGGCCGTACCCTGTCTGATTAC 4014360 Query 111277 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || |||||||| || || |||||||||||||||||| | ||||| Sbjct 4014359 AACATCCAGAAAGAATCCACGCTGCATTTAGTGTTGCGTCTGAGGGGTGG 4014310 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||| || || | || |||||||| ||||| |||| ||| || || Sbjct 4013852 ATGCAAATATTTGTGAAGACCCTCACTGGCAAAACAATTACTCTGGAGGTGGAGCCAAGT 4013793 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || || |||||| ||||||||||| |||| ||||| Sbjct 4013792 GACACAATTGAGAATGTGAAGGCCAAAATTCAAGACAAAGAAGGTATTCCTCCAGATCAG 4013733 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111277 ||||| | |||| ||| || ||||| |||||||| || | |||| | ||||||| Sbjct 4013732 CAAAGATTGATTTTTGCCGGGAAACAGCTGGAAGATGGTCGCACCCTAT--CAGATTATA 4013675 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 | || || |||||||| || | ||| | || | |||||| | ||||| Sbjct 4013674 ACATCCAGAAAGAATCCACCTTGCATCTTGTCCTTCGTCTGAGGGGTGG 4013626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421681712925088