Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq81 185 1e-41 seq1540 104 3e-17 >seq81 Length=2592809 Score = 185 bits (204), Expect = 1e-41 Identities = 198/262 (76%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| ||| || ||| |||| ||||||||| | || || || || || | ||| Sbjct 1420582 GGAAGGCGACCTCCGGGCACCTCTTGACGTTCCGGCACACCAGCTTCTCTATGGAGGCGG 1420523 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 |||| || || ||| ||| || || ||||||||||| |||||||||||| |||||| Sbjct 1420522 TCTTTACCATGTTGAAGCCCGTCTCCCCCCCGAAGGTGCTCGGCTTCCAGTACTCCGGGG 1420463 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| |||| ||||||| |||||||||||||| || || |||| ||||| |||| Sbjct 1420462 AGCAGATGGGGTTCCCCATGAGTCCTTTGAGGGAGAAGGGGGCTCCCATCTCGATCATGC 1420403 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| |||||||||| |||||| ||| || |||| || || || | ||| | ||||| Sbjct 1420402 TCTCCCCGAAGATGGAGTTGGGGTGGGTTTTCTCCAGCAGGAGGCCCGGGTAGAACTCCA 1420343 Query 8529 CAGCCTCGACGTCTCCGTAAAG 8550 || |||| ||| ||||| || Sbjct 1420342 GGGCGTCGATGTCGCCGTACAG 1420321 Score = 102 bits (112), Expect = 1e-16 Identities = 180/262 (69%), Gaps = 8/262 (3%) Strand=Plus/Minus Query 9229 GTTTCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGA 9288 || || ||||| | || || | ||||| ||||| || |||||||| | ||| || Sbjct 1411500 GTCTCACCGATGAGAATCAGCCTGGTGGTTTGGAAGAGCTGCTCGTCCCCCCACGTGGGG 1411441 Query 9289 TGTTCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTAC 9348 ||||| | ||||| || ||||| |||| |||||| || | |||||| | ||||||||| Sbjct 1411440 TGTTCCTCCTTCAGGACGTCGCAGACCCGGTTGTGCTCGCGGAGCCAAAGCGTGGCGTAC 1411381 Query 9349 ATCATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCG 9408 ||||| || || || | || ||||| |||| || || | || || || | | | | Sbjct 1411380 ATCATCAGTCCGGGGAGGAGCCCAAACACCTCCTGCCCCATGGCGAGCTGCTTCTCCTTG 1411321 Query 9409 G----GCACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATA 9464 | || || |||| ||||||||||| || | |||| | || | || ||||| Sbjct 1411320 GGGATGCTCTCCGGG----TAGATCATGTGGACGGGAGCGTCGATCACTGTTGGTGGATA 1411265 Query 9465 CATTTCACCGTCAATCATCTGA 9486 ||| || || | || |||||| Sbjct 1411264 CATATCTCCATTTATTATCTGA 1411243 >seq1540 Length=380051 Score = 104 bits (114), Expect = 3e-17 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 8345 GCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCC 8404 || || || || || | || ||||| |||||| || ||||| || |||||||| | Sbjct 251614 GCACTGTTTACAATATCAAAGCCCACCCTTCCGCCAAATGTGCTAGGTTTCCAGTATTCA 251555 Query 8405 GGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGA 8464 || ||||| || ||| |||| |||||||| | || |||||||| || | || | Sbjct 251554 GGAGAGCAAATTGGGTTTCCCATAAGGCCTTTCAATGAAAACGGAGCACCAATTTCAACC 251495 Query 8465 ATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGC 8524 ||| |||| || || ||||| |||||||| ||||||||| | || | ||| | Sbjct 251494 ATGGTCTCTCCAAATATGGCCCCAGGACGGGGTCGTTCCACCAAAAGACCTGGGTAGAAT 251435 Query 8525 TCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 || ||||| || | |||||| || || | ||||| |||| | |||||||||||| Sbjct 251434 TCTACAGCATCAATGTCTCCATATAGTTCTTCAAGTTCTGCAGATAATTCCTTTTCTCCT 251375 Score = 96.9 bits (106), Expect = 5e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 9645 TTGTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCC 9704 |||||||||||||||| || ||| ||||||||||||| | |||| |||||| Sbjct 247345 TTGTTCTTACCCCATGCCCAAGTGCTTTAGTGAAGGCAGCTCCTCTTTTGGTGTCAGTCT 247286 Query 9705 TAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGG 9764 |||| || ||||| || || |||||| |||| || |||||||| | ||||| ||||| | Sbjct 247285 TAAAGAATTGGTGTGTAAAGTGTTGGGCAAAGAATGCAAACATCATATTGGTTCCCTGTG 247226 Query 9765 GATCGGGAGTGAA 9777 | || || |||| Sbjct 247225 GGTCAGGGATGAA 247213 Score = 89.7 bits (98), Expect = 7e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 9271 TCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTG 9330 || ||| ||| || || || || || |||| | ||| || || | |||||||||||| Sbjct 247856 TCATCATCCCACTCAGGGTGCTCCTGCATCAGTATATCACAGACGCGGTTGTGTTCCCTC 247797 Query 9331 AGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACA 9390 ||||| || | | |||||||| | ||| ||||| ||||||||| |||| || || || Sbjct 247796 AGCCATATGATAGAATACATCATCAACCCTGGTACAAGGCCAAAAACCTCCTGTCCAACT 247737 Query 9391 GCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTG 9450 || | || | | ||| |||| | || || || | ||| | ||| ||| || Sbjct 247736 GCAAATCGAAGATGTTCTGGCATATGTGGTGGGTAAAGCATTTCAACCCCTGTGTCATTC 247677 Query 9451 ACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 || | || || ||||| ||||| ||||| |||| Sbjct 247676 ACTGTTGGAGGGTACATCTCACCATCAATAATCT 247643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716651091339520