Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq9 102 8e-17 seq12 89.7 5e-13 >seq9 Length=159361991 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| |||||||| ||||||||||| || ||||| | || ||||| |||||||||| Sbjct 138039860 CTTCATCTCTGCTAATAAGTTCGTTAGAGAAAGTGAGTCCAGGCATCAGCCCTCGTTTCT 138039801 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 | | ||||||||| | ||||||||| || || || || || || ||||||| ||||| | Sbjct 138039800 TCAGCCAGAATATGGAAGCAAATGAACCAGAGAAAAAGATCCCTTCAACAGCAGCAAAGG 138039741 Query 16344 C 16344 | Sbjct 138039740 C 138039740 Score = 93.3 bits (102), Expect = 4e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 ||||| || |||||||| | |||||||||||| || || |||||||| || || || ||| Sbjct 138038972 ATATATGTGTCAATCAGAAGACTGTACATTTCAGAATGAATGTTCTCCATTGCAATTTGA 138038913 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCC 16570 || ||||| ||||| ||| |||| | || ||| |||||| Sbjct 138038912 AAACCATAAAAGCAGCGAACCTCGGTTACTTGCACTTCC 138038874 Score = 89.7 bits (98), Expect = 5e-13 Identities = 104/139 (75%), Gaps = 5/139 (4%) Strand=Plus/Minus Query 15869 TCCAATGAAAATGTGTTATCTTGT---TTAGAAGCAACACCCATTCTTTGGTAATCACTA 15925 |||| || || |||||||||| | || || |||||||| | ||||| |||| | Sbjct 138029401 TCCAGTGTGAAAGTGTTATCTTTTGGCTTTGACATGACACCCATCTTCTGGTATTCACCA 138029342 Query 15926 ACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAG 15985 || | || || ||||||||||| ||||| || ||||| || |||||||| || ||||| Sbjct 138029341 ACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAAAGAGATGTTTTCCATGAAGTCAAAT 138029282 Query 15986 GGATTAGTAGC--TGAAAA 16002 ||||||| || |||||| Sbjct 138029281 GGATTAGAGGCCTTGAAAA 138029263 >seq12 Length=128359586 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || ||||| ||||| || ||||||||||| || | || ||||| || | ||||||| Sbjct 109014791 TCATCTCTACTGATCAGCTCGTTGGAAAAGGTGAGTCCAGGCATGAGACCCCTTTTCTTT 109014850 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | |||||| || |||||||| ||||| || |||||||| || || || | ||||| || Sbjct 109014851 AGCCAGAAAATTGCAGCAAAGGACCCAGAGAAGAATATTCCTTCTACTGCAGCAAATGC 109014909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510723779601560