Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq2 113 4e-20 seq1 93.3 4e-14 >seq2 Length=179946965 Score = 113 bits (124), Expect = 4e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || || ||||| | ||| |||||||||||| | |||||||| ||||||||| ||||| Sbjct 133019316 GACAAGGAAGGCATTCCCCCTGATCAACAAAGATTGATCTTTGCTGGCAAACAATTGGAA 133019375 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| || ||| || | ||||||||||||||||||||||| ||||| ||| |||| | Sbjct 133019376 GATGGCAGAACCCTGTCTGATTACAATATTCAGAAGGAATCCACTCTGCACTTGGTTCTC 133019435 Query 29175 CGATTACGAGGAGGG 29189 || || |||| ||| Sbjct 133019436 CGTTTGAGAGGTGGG 133019450 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||||||||| |||| || || || || |||||||||||| ||| || || Sbjct 133019907 ATGCAAATATTTGTCAAGACCTTAACTGGTAAAACCATTACCCTTGAAGTTGAGCCAAGT 133019966 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || ||||| ||||||| |||||||||||| | ||| || || Sbjct 133019967 GACACAATTGAAAATGTTAAGGCAAAAATTCAGGATAAAGAAGGTATTCCCCCTGACCAG 133020026 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||| | || ||||| ||||| |||||||||||| | ||| || | || || || Sbjct 133020027 CAGAGATTGATTTTTGCTGGCAAGCAACTGGAAGATGGCCGAACCCTGTCAGACTATAAC 133020086 Query 29142 ATTCAGAAGGAATCTAC 29158 || ||||| ||||| || Sbjct 133020087 ATCCAGAAAGAATCCAC 133020103 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||||||||| |||| ||||| || || || || |||||| || ||||| Sbjct 133020134 AATGCAAATATTTGTCAAGACATTAACTGGGAAGACAATTACCCTTGAGGTTGAACCAAG 133020193 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | || ||||| || |||||||| | ||| || || Sbjct 133020194 TGACACAATTGAAAATGTAAAAGCCAAAATCCAAGACAAAGAAGGCATTCCCCCTGACCA 133020253 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || ||| | || ||||| || || |||||||||||| || ||| || | || ||||| Sbjct 133020254 GCAGAGATTAATTTTTGCTGGTAAGCAACTGGAAGATGGCAGAACACTGTCTGACTACAA 133020313 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||||||||||||||| ||||| ||| |||| Sbjct 133020314 TATTCAGAAGGAATCCACTCTGCACTTGGT 133020343 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || || ||||| | ||| || ||||||||| | |||||||| || || || |||||| Sbjct 133019544 GACAAGGAAGGCATTCCCCCTGACCAACAAAGATTGATCTTTGCTGGTAAGCAGCTGGAA 133019603 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||| | ||| | | || |||||||| ||||||||||||||||| ||| |||| Sbjct 133019604 GATGGGAGAACACTATCTGACTACAATATACAGAAGGAATCTACTCTGCACTTGGT 133019659 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 |||||| ||||||||||| | || ||| |||||||| | || ||||| |||||| Sbjct 133019079 AAAATTCAGGATAAAGAAGGCATTCCTCCAGACCAACAAAGGTTGATTTTTGCTGGCAAA 133019138 Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 || ||||||||| ||| || | || || || ||||| |||||||| ||||| ||| Sbjct 133019139 CAGCTGGAAGATGGTCGAACCCTGTCAGACTATAACATTCAAAAGGAATCCACTCTGCAC 133019198 Query 29166 ATGGTGTTACGATTACGAGGAGG 29188 |||| | || || |||| || Sbjct 133019199 TTGGTTCTCCGTTTGAGAGGTGG 133019221 >seq1 Length=219802468 Score = 93.3 bits (102), Expect = 4e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || || ||||| | ||| |||||||| ||| | || ||||| ||||||||| ||||| Sbjct 160684170 GACAAGGAAGGCATTCCCCCTGATCAACAGAGATTGATATTTGCTGGCAAACAATTGGAA 160684229 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||| | ||| || | || || ||||||||||||||||||||||| ||| |||| Sbjct 160684230 GATGGAAGAACCCTGTCAGACTATAATATTCAGAAGGAATCTACTCTGCACTTGGT 160684285 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||||||||| | ||| || |||||||| | ||||| || |||||||| ||||| Sbjct 160683714 GATAAAGAAGGCATTCCCCCTGACCAACAAAGGTTGATCTTCGCTGGCAAACAGCTGGAG 160683773 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| ||| || | |||||||| ||||| |||||||| ||||| ||| |||| | Sbjct 160683774 GATGGACGAACCCTGTCAGATTACAACATTCAAAAGGAATCCACTCTGCACTTGGTTCTC 160683833 Query 29175 CGATTACGAGGAGGG 29189 || || |||| ||| Sbjct 160683834 CGTTTGAGAGGGGGG 160683848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427772030468615