Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq1 100 3e-16 seq8 91.5 2e-13 seq7 91.5 2e-13 seq4 91.5 2e-13 >seq1 Length=219802468 Score = 100 bits (110), Expect = 3e-16 Identities = 112/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCC-TAGG 83449 ||||||| |||||||||||||| ||||| | || ||| |||||| |||| || || | Sbjct 108877895 CCTGGTGTCCGAACTGGTTACAGGGGAAGGCGAGGACTTGCAGCCCGCGAGAGCCATATG 108877954 Query 83450 CGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCT 83509 | | |||||||| | ||||||| || || ||||||| || | |||||||| || || Sbjct 108877955 TG-CTCTGCAGCTTGCTCATCTGGGTATAATCCCGGATAGTTGTGCCTCAGAGCGATGCC 108878013 Query 83510 ACGTTCTCGATGAGCAAGACCCGGCCC 83536 || ||||| ||||| | || |||||| Sbjct 108878014 ACATTCTCAATGAGAAGCACTCGGCCC 108878040 Score = 86.0 bits (94), Expect = 8e-12 Identities = 110/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCC-TAGG 83449 ||||||| |||||||||||||| ||||| | || || |||||| || | || || | Sbjct 118457965 CCTGGTGTCCGAACTGGTTACAGGGGAAGGCGAGGACCTGCAGCCCGCGGGAGCCATACG 118457906 Query 83450 CGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCT 83509 | | |||||||| | ||||||| || || ||||||| || | |||||||| || || Sbjct 118457905 TG-CTCTGCAGCTTGCTCATCTGGGTATAATCCCGGATAGTTGTGCCTCAGAGCGATGCC 118457847 Query 83510 ACGTTCTCGATGAGCAAGACCCGGCCCCG 83538 || ||||| || | | || |||||||| Sbjct 118457846 ACATTCTCAATAAAAAGCACTCGGCCCCG 118457818 >seq8 Length=121245977 Score = 91.5 bits (100), Expect = 2e-13 Identities = 111/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCC-TAGG 83449 ||||||| |||||||||||||| ||||| | || || |||||| || | || || | Sbjct 98447412 CCTGGTGTCCGAACTGGTTACAGGGGAAGGCGAGGACCTGCAGCCCGCGGGAGCCATACG 98447471 Query 83450 CGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCT 83509 | | |||||| | | ||||||| || || ||||||| || | |||||||| || || Sbjct 98447472 TG-CTCTGCAGTTTGCTCATCTGGGTATAATCCCGGATAGTTGTGCCTCAGAGCGATGCC 98447530 Query 83510 ACGTTCTCGATGAGCAAGACCCGGCCCCG 83538 || ||||| ||||| | || |||||||| Sbjct 98447531 ACATTCTCAATGAGAAGCACTCGGCCCCG 98447559 >seq7 Length=144084680 Score = 91.5 bits (100), Expect = 2e-13 Identities = 111/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCC-TAGG 83449 ||||||| |||||||||||||| ||||| | || || |||||| || | || || | Sbjct 105103066 CCTGGTGTCCGAACTGGTTACAGGGGAAGGCGAGGACCTGCAGCCCGCGGGAGCCATACG 105103007 Query 83450 CGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCT 83509 | | |||||||| | ||||||| || || ||||||| || | |||||||| || || Sbjct 105103006 TG-CTCTGCAGCTTGCTCATCTGGGTATAATCCCGGATAGTTGTGCCTCAGAGCGATGCC 105102948 Query 83510 ACGTTCTCGATGAGCAAGACCCGGCCCCG 83538 || ||||| ||||| | | |||||||| Sbjct 105102947 ACATTCTCAATGAGAAGCATTCGGCCCCG 105102919 >seq4 Length=159726490 Score = 91.5 bits (100), Expect = 2e-13 Identities = 111/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCC-TAGG 83449 ||||||| |||||||||||||| | ||| | || || |||||| || | || || | Sbjct 44066028 CCTGGTGTCCGAACTGGTTACAGGCGAAGGCGAGGACCTGCAGCCCGCGGGAGCCATACG 44066087 Query 83450 CGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCT 83509 | | |||||||| | ||||||| || || ||||||| || | |||||||| || || Sbjct 44066088 TG-CTCTGCAGCTTGCTCATCTGGGTATAATCCCGGATAGTTGTGCCTCAGAGCGATGCC 44066146 Query 83510 ACGTTCTCGATGAGCAAGACCCGGCCCCG 83538 || ||||| ||||| | || |||||||| Sbjct 44066147 ACATTCTCAATGAGAAGCACTCGGCCCCG 44066175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 607974673191320