Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq2 113 4e-20 seq1 93.3 3e-14 >seq2 Length=179946965 Score = 113 bits (124), Expect = 4e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || || ||||| | ||| |||||||||||| | |||||||| ||||||||||||||| Sbjct 133019316 GACAAGGAAGGCATTCCCCCTGATCAACAAAGATTGATCTTTGCTGGCAAACAATTGGAA 133019375 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| || ||| || | |||||||||||||| |||||||| ||||| ||| |||| | Sbjct 133019376 GATGGCAGAACCCTGTCTGATTACAATATTCAGAAGGAATCCACTCTGCACTTGGTTCTC 133019435 Query 25248 CGATTACGAGGAGGG 25262 || || |||| ||| Sbjct 133019436 CGTTTGAGAGGTGGG 133019450 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| ||||||||||| | || ||| |||||||| | || ||||| |||||| Sbjct 133019079 AAAATTCAGGATAAAGAAGGCATTCCTCCAGACCAACAAAGGTTGATTTTTGCTGGCAAA 133019138 Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 || |||||||| ||| || | || || || |||||||||||||| ||||| ||| Sbjct 133019139 CAGCTGGAAGATGGTCGAACCCTGTCAGACTATAACATTCAAAAGGAATCCACTCTGCAC 133019198 Query 25239 ATGGTGTTACGATTACGAGGAGG 25261 |||| | || || |||| || Sbjct 133019199 TTGGTTCTCCGTTTGAGAGGTGG 133019221 >seq1 Length=219802468 Score = 93.3 bits (102), Expect = 3e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || || ||||| | ||| |||||||| ||| | || ||||| ||||||||||||||| Sbjct 160684170 GACAAGGAAGGCATTCCCCCTGATCAACAGAGATTGATATTTGCTGGCAAACAATTGGAA 160684229 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243 ||| | ||| || | || || |||||||| |||||||||||||| ||| |||| Sbjct 160684230 GATGGAAGAACCCTGTCAGACTATAATATTCAGAAGGAATCTACTCTGCACTTGGT 160684285 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||||||||| | ||| || |||||||| | ||||| || |||||||| |||| Sbjct 160683714 GATAAAGAAGGCATTCCCCCTGACCAACAAAGGTTGATCTTCGCTGGCAAACAGCTGGAG 160683773 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| ||| || | |||||||| |||||||||||||| ||||| ||| |||| | Sbjct 160683774 GATGGACGAACCCTGTCAGATTACAACATTCAAAAGGAATCCACTCTGCACTTGGTTCTC 160683833 Query 25248 CGATTACGAGGAGGG 25262 || || |||| ||| Sbjct 160683834 CGTTTGAGAGGGGGG 160683848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410255923494662