Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3 118 1e-21 seq12 107 2e-18 seq1 104 2e-17 seq63962 98.7 1e-15 seq2 98.7 1e-15 >seq3 Length=181146889 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || |||||||| || || ||||| ||||| ||| | || || || | | Sbjct 29378907 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATTACCCTGGAGGTAGAGCCAAGT 29378848 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| | || ||| |||| |||||||| ||||| || | ||||| Sbjct 29378847 GACACCATAGAAAACG-TGAAATCAAAGATTCAAGACAAAGAAGGCATTCCTCCAGACCA 29378789 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || | | |||| || ||||| |||||||| || | ||||| || |||||||| Sbjct 29378788 ACAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACGCTTTGTGACTACAA 29378729 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| |||| ||||||| ||| | || ||||||| ||| Sbjct 29378728 TATCCAGAAGGAATCCACCTTGCATCTTGTGCTTCGTCTGAGGGGTGGC 29378680 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||||||||| | || ||||| ||||| ||| | || || || | | Sbjct 29377256 ATGCAGATCTTCGTAAAAACTTTGACTGGCAAGACCATTACCCTAGAGGTAGAGCCAAGT 29377197 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| | || ||| |||| || ||||| ||||| || | ||||| Sbjct 29377196 GACACCATAGAAAACG-TGAAATCAAAGATTCAAGATAAAGAAGGCATTCCTCCAGACCA 29377138 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || | | |||| || ||||| |||||||| || | ||||||||| |||||||| Sbjct 29377137 ACAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTTTGTGACTACAA 29377078 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| |||| ||||||| || | || ||||||| || Sbjct 29377077 TATCCAGAAGGAATCCACCTTGCATCTTGTACTTCGTCTGAGGGGTGG 29377030 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| || || ||||| ||||| ||| | || || || | | Sbjct 29379135 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATTACCCTGGAGGTAGAGCCAAGT 29379076 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||| | ||| || | |||||||| ||||| || | |||||| Sbjct 29379075 GACACTATTGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 29379016 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| || ||||| |||||||| || | |||||||||| || ||||| Sbjct 29379015 CAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTCTGTGATTACAAT 29378956 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| |||| || ||||| ||| | || ||||||| || Sbjct 29378955 ATCCAGAAGGAATCCACCCTTCATCTTGTGCTTCGTCTGAGGGGTGG 29378909 >seq12 Length=128359586 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || |||||||| || |||||||| || || | ||||| |||||| | || | || || Sbjct 101402629 AAGATGCAAATCTTTGTAAAAACCCTTACTTGGAAAACAATCACCCTTGAGGGTAAATCC 101402688 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | | ||| | |||| ||||| | || || || || || ||| | ||| Sbjct 101402689 AGTGATACCATTGAAAATGTGAAGGCTAAAATCCAGGATAAGGAAGGTATTCCCCCTGAC 101402748 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || ||| || || |||||||| || || || | ||| || | ||||| Sbjct 101402749 CAGCAGTGTCTGCTCTTTGCTGGTAAACAGCTTGAAGATGAACACACTCTATATGACTAT 101402808 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGC 40903 ||||||||||| ||| |||| |||| |||||||||| Sbjct 101402809 AACATCCAGAAAGAGTCCACATTGCACCTAGTGTTGC 101402845 >seq1 Length=219802468 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| ||||| || || || | || || || ||||| || | || || ||| | | Sbjct 160685217 ATGCAGATATTTGTCAAGACCTTAACTGGGAAGACCATTACTCTTGAAGTTGAACCAAGT 160685276 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| |||||| | || || || ||||| ||| | |||||| Sbjct 160685277 GACACCATTGAGAATGTAAAGGCAAAAATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 160685336 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | || | || ||||| |||||||| || | ||||| ||| ||||||||| Sbjct 160685337 CAGAGATTGATATTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTCTCTGACTACAAC 160685396 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || ||||| || |||| || || || || |||| |||||||| || Sbjct 160685397 ATTCAGAAAGAATCCACCCTCCACCTGGTCCTGCGTTTGAGGGGTGG 160685443 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| ||||| || ||||| ||||| || || |||||||| | || || || | Sbjct 160683618 AACATGCAGATATTTGTGAAAACTCTCACTGGGAAGACCATCACACTTGAAGTTGAGCCA 160683677 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | || | ||||| | || ||||| ||||| ||| | ||| Sbjct 160683678 AGTGACACAATTGAGAATGTGAAAGCTAAAATCCAAGATAAAGAAGGCATTCCCCCTGAC 160683737 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || ||| | | |||| ||| |||||||||||||| || | || ||||| || ||| Sbjct 160683738 CAACAAAGGTTGATCTTCGCTGGCAAACAGCTGGAGGATGGACGAACCCTGTCAGATTAC 160683797 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| || ||||| |||| ||||| | || | || ||||| || || Sbjct 160683798 AACATTCAAAAGGAATCCACTCTGCACTTGGTTCTCCGTTTGAGAGGGGG 160683847 >seq63962 Length=314 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 |||||||| || || || | || |||||||||||||| || | ||||| ||| ||| Sbjct 307 GACCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGAC 248 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||| ||| |||| ||||| || ||||||||| || | || ||| Sbjct 247 TACAACATCCAGAAAGAGTCCACCCTGCACCTGGTGTTGCGCCTGCGAGGTGGC 194 >seq2 Length=179946965 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| ||||| || || || | || || || ||||| ||| | || || || ||| Sbjct 133020363 ATGCAGATATTTGTGAAGACCTTAACTGGGAAGACCATTACCCTTGAAGTTGAGCCCAGT 133020422 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| |||||| | || || || || ||||| | ||||| Sbjct 133020423 GACACAATTGAGAATGTAAAGGCAAAAATCCAGGATAAGGAAGGAATCCCTCCTGACCAA 133020482 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| || ||||| |||||||| || | ||||| ||| ||||||||| Sbjct 133020483 CAGAGATTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACTCTCTCTGACTACAAC 133020542 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || ||||| || |||| || || || || |||| |||||||| || Sbjct 133020543 ATACAGAAAGAATCCACCCTCCACCTGGTCCTGCGTTTGAGGGGTGG 133020589 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||||||||| || || || | || || |||||||| ||| | || || || | | Sbjct 133019907 ATGCAAATATTTGTCAAGACCTTAACTGGTAAAACCATTACCCTTGAAGTTGAGCCAAGT 133019966 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | |||| |||||||| || ||||| || || ||| | |||||| Sbjct 133019967 GACACAATTGAAAATGTTAAGGCAAAAATTCAGGATAAAGAAGGTATTCCCCCTGACCAG 133020026 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | || | || ||||| || ||||| || | || ||||| ||||| ||| Sbjct 133020027 CAGAGATTGATTTTTGCTGGCAAGCAACTGGAAGATGGCCGAACCCTGTCAGACTATAAC 133020086 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||| || |||| |||| |||| | || |||| || || Sbjct 133020087 ATCCAGAAAGAATCCACCTTGCACTTAGTTCTCCGTCTGAGAGGTGG 133020133 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| ||||| || ||||| ||||| || || |||||||| | || || || | Sbjct 133018992 AACATGCAGATATTTGTGAAAACTCTCACTGGGAAGACCATCACACTAGAAGTTGAGCCA 133019051 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | | | | |||| ||||||| || ||||| ||||| || | ||| Sbjct 133019052 AGTGATACTATTGAGAATGTGAAGGCTAAAATTCAGGATAAAGAAGGCATTCCTCCAGAC 133019111 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || ||| | | || | || |||||||||||||| || | || ||||| ||||| Sbjct 133019112 CAACAAAGGTTGATTTTTGCTGGCAAACAGCTGGAAGATGGTCGAACCCTGTCAGACTAT 133019171 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||| || ||||| |||| ||||| | || | || ||||| || ||| Sbjct 133019172 AACATTCAAAAGGAATCCACTCTGCACTTGGTTCTCCGTTTGAGAGGTGGC 133019222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514523441552080