Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1 111 1e-19 seq3 109 5e-19 seq12 82.4 7e-11 >seq1 Length=219802468 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 || ||||| | || ||||||||||||||||||||||| | |||||| ||| || Sbjct 160685197 ACTAAGTGCAAGGTGGACTCTTTTTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 160685138 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| | || | | ||| ||||| || || ||||| || |||||| Sbjct 160685137 AGCTGCTTCCCAGCAAAAATCAATCTCTGTTGATCAGGGGGAATGCCTTCTTTGTCTTGG 160685078 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 |||||| ||||| | || | |||||| | || | || || || | || | || || Sbjct 160685077 ATTTTTGCCTTAACATTCTCAATGGTGTCACTTGGT-TCAACTTCTAGAGTAATTGTCTT 160685019 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| ||||| ||||| |||||||| Sbjct 160685018 CCCGGTCAGTGTTTTCACAAATATCTGCAT 160684989 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 || ||||| | || || ||||||||||||||||| || | |||||| ||| || Sbjct 160684513 ACTAAGTGCAAGGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 160684454 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| | || | | ||||||||| ||||| ||||| || |||||| Sbjct 160684453 AGCTGCTTACCAGCAAAAATCAATCTCTGCTGATCAGGAGGAATGCCTTCTTTGTCTTGG 160684394 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 |||||| ||| || | ||| | ||||| | || | || || || | ||| | || || Sbjct 160684393 ATTTTTGCTTTTACATTTTCAATTGTGTCACTTGGT-TCAACTTCAAGGGTAATGGTCTT 160684335 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || | || || ||||| ||||||||| Sbjct 160684334 CCCAGTTAAGGTCTTGACAAATATCTGCATG 160684304 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || || || ||||||||||||||||| || || || |||||| Sbjct 160683829 ACCAAGTGCAGAGTGGATTCCTTTTGAATGTTGTAATCTGACAGGGTTCGTCCATCCTCC 160683770 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| |||||| |||| | | || || || || || ||||| || || ||| Sbjct 160683769 AGCTGTTTGCCAGCGAAGATCAACCTTTGTTGGTCAGGGGGAATGCCTTCTTTATCTTGG 160683710 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| ||| || | || | ||||| | ||| || || | || | || || Sbjct 160683709 ATTTTAGCTTTCACATTCTCAATTGTGTCACTTGGCTCAACTTCAAGTGTGATGGTCTTC 160683650 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || |||||||| ||||| ||||||||| Sbjct 160683649 CCAGTGAGAGTTTTCACAAATATCTGCATG 160683620 >seq3 Length=181146889 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||||||||| || || ||||| || | | ||||| ||| || ||||| || || Sbjct 29378483 GTAGACTCTTTCTGGATATTGTAGTCACAAAGGGTGCGACCATCTTCCAGCTGCTTGCCG 29378542 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | | || || || ||||| ||||| || |||||| ||| ||| ||| Sbjct 29378543 GCAAAGATCAACCTTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATCTTTGATTTC 29378602 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||| | |||||| | ||| ||||| | ||| | || ||||| |||| |||| Sbjct 29378603 ACATTTTCTATGGTGTCACTTGACTCTACCTCCAGGGTAATGGTCTTGCCAGTCAAAGTT 29378662 Query 118722 TTTACAAAAATCTGCATG 118739 |||||||| ||||||||| Sbjct 29378663 TTTACAAAGATCTGCATG 29378680 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || || || ||||| || | | ||||| ||| || ||||| || || Sbjct 29378711 GTGGATTCCTTCTGGATATTGTAGTCACAAAGCGTGCGGCCATCTTCCAGCTGCTTGCCG 29378770 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | | ||| || || ||||| ||||| || |||||| ||| ||| ||| Sbjct 29378771 GCAAAGATCAACCTCTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATCTTTGATTTC 29378830 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||| | |||||| | ||| ||||| | ||| | || ||||| ||||| ||| Sbjct 29378831 ACGTTTTCTATGGTGTCACTTGGCTCTACCTCCAGGGTAATGGTCTTGCCAGTCAGGGTT 29378890 Query 118722 TTTACAAAAATCTGCAT 118738 |||||||| |||||||| Sbjct 29378891 TTTACAAAGATCTGCAT 29378907 >seq12 Length=128359586 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 |||||| | ||| | ||| |||||||| || ||||| || || | |||| | ||| Sbjct 101402844 CAACACTAGGTGCAATGTGGACTCTTTCTGGATGTTATAGTCATATAGAGTGTGTTCATC 101402785 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || |||||||| ||||| ||| |||| |||||| || || || || || ||||| || Sbjct 101402784 TTCAAGCTGTTTACCAGCAAAGAGCAGACACTGCTGGTCAGGGGGAATACCTTCCTTATC 101402725 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||||| || || | ||| | ||| || || | |||| | ||| | || Sbjct 101402724 CTGGATTTTAGCCTTCACATTTTCAATGGTATCACTGGATTTACCCTCAAGGGTGATTGT 101402665 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| | || || ||||||||||| || ||||| Sbjct 101402664 TTTCCAAGTAAGGGTTTTTACAAAGATTTGCAT 101402632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433259196254836