Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq10 122 2e-22 >seq10 Length=136570856 Score = 122 bits (134), Expect = 2e-22 Identities = 120/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 51901 TGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATACTTAGG 51960 |||| |||||| | || ||||| | ||||| || || || |||||||||||||| ||| Sbjct 71939127 TGGTGGTACTACGTTTCAAAAGGAGTGGAATATTTTGACACAGTATTTTTCATACTAAGG 71939186 Query 51961 AAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTTACTCTA 52020 ||||||||||| || |||||||| | ||||||||||| || | || ||||| || || Sbjct 71939187 AAAAAATTTAACCAAATTAGTTTTTTGCACGTATATCACCACTGCACAATGTTCACACTT 71939246 Query 52021 GGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 | ||||| || || || ||| |||| ||||| || Sbjct 71939247 TGGTGGATCGGAATCAAGTGGGTTGCCGGAGGACA 71939281 Score = 93.3 bits (102), Expect = 8e-14 Identities = 102/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||||||||| || | ||| | | ||||||||| | |||||| || ||||| Sbjct 71941082 GCATTTTTTGGAGCACACATGAATGCCCTGATCCATGTTGTGATGTACTTATACTATGGG 71941141 Query 52117 ATGGCCGCTTGTGGTCC-TATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 |||| || ||||| || || | ||| |||||| ||||||||||||| ||||| || || Sbjct 71941142 TTGGCTGCCTGTGGACCACATCTACAG-AAGTATTTATGGTGGAAACGCTATCTGACAAT 71941200 Query 52176 AATGCAGTTGGTA 52188 | |||| ||||| Sbjct 71941201 ATTGCAACTGGTA 71941213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921950103501320