Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq2 107 3e-18 seq1 104 3e-17 >seq2 Length=179946965 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | | | ||||| || | ||| ||||| || ||||| ||||| || Sbjct 133019449 CCACCTCTCAAACGGAGAACCAAGTGCAGAGTGGATTCCTTCTGAATATTGTAATCAGAC 133019390 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||||| ||| || |||||||| |||||||| ||||||||||| ||||| || ||| Sbjct 133019389 AGGGTTCTGCCATCTTCCAATTGTTTGCCAGCAAAGATCAATCTTTGTTGATCAGGGGGA 133019330 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || ||||| Sbjct 133019329 ATGCCTTCCTTGTCTTG 133019313 Score = 107 bits (118), Expect = 3e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| || | | || || || || || |||||||| || ||||| |||| Sbjct 133020135 TTCCACCTCTCAGACGGAGAACTAAGTGCAAGGTGGATTCTTTCTGGATGTTATAGTCTG 133020076 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || |||| || ||| || | ||| || ||||||||||||||||| ||||| || || | Sbjct 133020075 ACAGGGTTCGGCCATCTTCCAGTTGCTTGCCAGCAAAAATCAATCTCTGCTGGTCAGGGG 133020016 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| ||||||||||| || Sbjct 133020015 GAATACCTTCTTTATCCTG 133019997 Score = 98.7 bits (108), Expect = 1e-15 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| | | | ||||| || | ||| ||||| ||| || || ||||| ||||| Sbjct 133019221 CCACCTCTCAAACGGAGAACCAAGTGCAGAGTGGATTCCTTTTGA-ATGTTATAGTCTGA 133019163 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 || |||| | ||| || | ||||| |||||||||||||| ||||| || || ||||| Sbjct 133019162 CAGGGTTCGACCATCTTCCAGCTGTTTGCCAGCAAAAATCAACCTTTGTTGGTCTGGAGG 133019103 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| ||||||||||| || Sbjct 133019102 AATGCCTTCTTTATCCTG 133019085 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| || | | ||||| || | ||| ||||| || ||||| || || || Sbjct 133020361 CCACCTCTGAGACGAAGGACCAAGTGCAGAGTGGATTCCTTCTGAATATTGTAGTCAGAC 133020302 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||||| ||| || | ||| || ||||||||||| ||||| ||||| || || ||| Sbjct 133020301 AGTGTTCTGCCATCTTCCAGTTGCTTACCAGCAAAAATTAATCTCTGCTGGTCAGGGGGA 133020242 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| ||||| Sbjct 133020241 ATGCCTTCTTTGTCTTG 133020225 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| || | | ||||| || | ||||||||| || |||||| || || || Sbjct 133019677 CCACCTCTGAGACGAAGGACCAAGTGCAGAGTAGATTCCTTCTGTATATTGTAGTCAGAT 133019618 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | ||| || | || || |||||||| ||||||||||| || || || ||| Sbjct 133019617 AGTGTTCTCCCATCTTCCAGCTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGGGGA 133019558 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || ||||| Sbjct 133019557 ATGCCTTCCTTGTCTTG 133019541 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| || | | |||||||| | || |||||||| |||||| || || || Sbjct 133019905 CCACCTCTCAGACGGAGAACCAAATGCAGGGTTGATTCTTTCTGTATATTGTAGTCAGAT 133019846 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | ||| || | || || |||||||| ||||||||||| || || || ||| Sbjct 133019845 AGTGTTCTCCCATCTTCCAGCTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGGGGA 133019786 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || ||||| Sbjct 133019785 ATGCCTTCCTTGTCTTG 133019769 >seq1 Length=219802468 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| || | | || || || || || |||||||| || || || || ||| Sbjct 160684531 CCACCTCTGAGACGAAGAACTAAGTGCAAGGTGGATTCTTTTTGAATGTTGTAGTCAGAA 160684472 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | || ||| || | || || ||||||||||||||||| |||||||| |||||| Sbjct 160684471 AGAGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAAATCAATCTCTGCTGATCAGGAGGA 160684412 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| ||||| Sbjct 160684411 ATGCCTTCTTTGTCTTG 160684395 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| || | | || || || || || || ||||| ||||| || || || Sbjct 160684987 CCACCTCTCAGACGAAGAACTAAGTGCAAGGTTGACTCTTTCTGAATATTGTAGTCAGAC 160684928 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||||| ||| |||| ||| || ||||||||||||||||| ||||| || || ||| Sbjct 160684927 AGGGTTCTGCCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGCTGGTCAGGGGGA 160684868 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| ||||| Sbjct 160684867 ATGCCTTCTTTGTCTTG 160684851 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| || | | |||||||| | ||| |||||||| ||||| || || || Sbjct 160684759 CCACCTCTGAGACGAAGGACCAAATGCAGAGTGGATTCTTTCTGAATATTGTAGTCAGAG 160684700 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | || ||| || | || || || ||||| ||||||||||| || || |||||| Sbjct 160684699 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAATCTTTGTTGGTCAGGAGGA 160684640 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 160684639 ATTCCTTCCTTATCCTG 160684623 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| || | | || || || || || || ||||| || || || ||||| Sbjct 160684075 CCACCTCTGAGACGAAGAACTAAGTGCAAGGTGGACTCTTTCTGAATGTTGTAGTCTGAC 160684016 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||||| ||| || | || || ||||||||||||||||| ||||| || || ||| Sbjct 160684015 AGGGTTCTGCCATCTTCCAGCTGCTTACCAGCAAAAATCAATCTCTGCTGGTCAGGGGGA 160683956 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| ||||| Sbjct 160683955 ATACCTTCTTTGTCTTG 160683939 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| || | | || || || || || || ||||| || || ||||| ||| Sbjct 160685215 CCACCTCTGAGACGAAGAACTAAGTGCAAGGTGGACTCTTTTTGAATGTTGTAATCAGAA 160685156 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | || ||| || | || || ||||||||||||||||| || ||||| || ||| Sbjct 160685155 AGAGTGCGGCCATCTTCCAGCTGCTTCCCAGCAAAAATCAATCTCTGTTGATCAGGGGGA 160685096 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| ||||| Sbjct 160685095 ATGCCTTCTTTGTCTTG 160685079 Score = 87.8 bits (96), Expect = 3e-12 Identities = 93/120 (78%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 ||||| || | ||| ||||| ||| || || || |||||||| || |||| | ||| || Sbjct 160683829 ACCAAGTGCAGAGTGGATTCCTTTTGA-ATGTTGTAATCTGACAGGGTTCGTCCATCCTC 160683771 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | ||||| ||||| || ||||| ||||| || || || ||||| |||||||||||||| Sbjct 160683770 CAGCTGTTTGCCAGCGAAGATCAACCTTTGTTGGTCAGGGGGAATGCCTTCTTTATCTTG 160683711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742522332655360