Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1 84.2 1e-11 >seq1 Length=219802468 Score = 84.2 bits (92), Expect = 1e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| |||||||| | || ||||||||| ||||||||||| || || ||| | || Sbjct 160685429 CAGGACCAGGTGGAGGGTGGATTCTTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATC 160685370 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| ||||||||| || || || | | ||||||||| ||| | || ||||| || Sbjct 160685369 TTCCAGCTGCTTGCCAGCAAATATCAATCTCTGCTGGTCAGGGGGAATGCCTTCCTTATC 160685310 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 || ||| ||||| || | || | || | | ||| || || | || ||||| Sbjct 160685309 CTGGATTTTTGCCTTTACATTCTCAATGGTGTCACTTGGTTCAACTTCAAGAGTAATGGT 160685250 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || | || || ||||| ||||||||| Sbjct 160685249 CTTCCCAGTTAAGGTCTTGACAAATATCTGCATC 160685216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322646626544480