Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq10 102 8e-17 seq9 102 8e-17 seq5 102 8e-17 >seq10 Length=136570856 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 16257 CTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTT 16316 |||| || || || || | || || || || || || || ||||| || || ||||| | Sbjct 119052165 CTTCATCTCTGCTAATAAGTTCATTAGAGAAAGTGAGTCCAGGCATCAGCCCCCGTTTCT 119052106 Query 16317 TAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATG 16376 | | |||||| || | |||||||| ||||| ||||| ||||||||||| || ||||||| Sbjct 119052105 TCAGCCAAAAAATGGATGCAAATGAGCCAGAGAAGAAAATACCTTCAACAGCAGCAAATG 119052046 Query 16377 CAACCAATCGCTCACC 16392 |||| | ||| ||||| Sbjct 119052045 CAACAACTCGTTCACC 119052030 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 16490 TCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTC 16549 || ||| |||| || ||| || || || || | || ||||||||||||||||||||| Sbjct 119051271 TCCTTGGGATCTTTAACATAGGTGTCAATAAGAAGGCTGTACATTTCTGAATGAATATTC 119051212 Query 16550 TCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 |||||||| || || || ||||||||||| | ||| || | | ||| ||||| Sbjct 119051211 TCCATTGCAATTTGGAAGCCATAAAAGCAGCGAGCCTCTGTAACTTGCACTTC 119051159 >seq9 Length=159361991 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 16257 CTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTT 16316 |||| || || || || | || || || || || || || ||||| ||||| ||||| | Sbjct 138027424 CTTCATCTCTGCTAATAAGTTCATTAGAGAAAGTGAGTCCAGGCATCAGTCCACGTTTCT 138027365 Query 16317 TAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATG 16376 | | |||||| || | ||||||||||| || ||||| || |||||||| || ||||||| Sbjct 138027364 TCAGCCAAAAAATGGATGCAAATGAACCGGAGAAGAAGATCCCTTCAACAGCAGCAAATG 138027305 Query 16377 CAACCAATCGCTCACC 16392 | |||| ||| ||||| Sbjct 138027304 CCACCACTCGTTCACC 138027289 Score = 100 bits (110), Expect = 3e-16 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 16488 TTTCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547 |||| ||| ||| |||||| || || || || | ||| |||||||| |||||||| | Sbjct 138038989 TTTCCTTGGGATCCTTAATATATGTGTCAATCAGAAGACTGTACATTTCAGAATGAATGT 138038930 Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 |||||||||| || ||||||||||||||||| | | | |||| || ||| ||||| Sbjct 138038929 TCTCCATTGCAATTTGAAAACCATAAAAGCAGCGAACCTCGGTTACTTGCACTTC 138038875 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 16257 CTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTT 16316 |||| || || || || | ||||| || || || || || ||||| || |||||||| | Sbjct 138039860 CTTCATCTCTGCTAATAAGTTCGTTAGAGAAAGTGAGTCCAGGCATCAGCCCTCGTTTCT 138039801 Query 16317 TAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATG 16376 | | ||| ||||| | |||||||||||||| || || || |||||||| || ||||| | Sbjct 138039800 TCAGCCAGAATATGGAAGCAAATGAACCAGAGAAAAAGATCCCTTCAACAGCAGCAAAGG 138039741 Query 16377 CAACCAATCGCTCACC 16392 | || | ||||| || Sbjct 138039740 CCACAAGGCGCTCGCC 138039725 Score = 89.7 bits (98), Expect = 5e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 15940 CATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAAT 15999 ||| || || ||||||| |||| |||| ||||||||||| || ||||||||||| || || Sbjct 138044399 CATCTTCTGGTATTCACCAACTTTCTTCTCAAAGAAATTGGTCTTTCCTTCTAAGGAGAT 138044340 Query 16000 ATTTTCCATAAAATCAAAAGGATT 16023 |||||||| || ||||| ||||| Sbjct 138044339 GTTTTCCATGAAGTCAAATGGATT 138044316 >seq5 Length=144167370 Score = 102 bits (112), Expect = 8e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 136084 GACGTTTATTTGTTTAACATAGCTATGTCGGATCTGATGTTAGTTTTTTCATTTCCTTTT 136143 || |||||| | |||||||| || | || ||||| |||| ||| | ||| |||| ||| Sbjct 57648542 GATGTTTATCTCTTTAACATGGCAGTCTCAGATCTACTGTTTGTTGTCTCACTTCCATTT 57648483 Query 136144 ATTA--TACATAATGATTTAAATGAATGGATATTTGGAGAGTTTATGTGTAAGTTGGTAT 136201 ||| |||| ||| | |||||| |||||||||||| | |||||||| || ||| Sbjct 57648482 ATTGCCTACACAATCAA--AAATGAGTGGATATTTGGAAATGCCATGTGTAAAATGTTAT 57648425 Query 136202 TGGGAGTATATTTTGTAGGATTTTTTAGCAACATGTTTTTTGTAACGTTAATAAGCATAG 136261 |||||||||| || |||||||||| || || ||| |||| | || ||| ||| Sbjct 57648424 CTACCATATATTTTGTTGGTTTTTTTAGCAGTATATTCTTTATAACTGTTATGAGCGTAG 57648365 Query 136262 ACAGATATATTTTAGTAGT 136280 || | ||| || | |||| Sbjct 57648364 ACCGCTATTTTGCAATAGT 57648346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461887418013800