Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq2 111 1e-19 seq1 98.7 8e-16 seq3 95.1 1e-14 >seq2 Length=179946965 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||||||| | | ||||||||||| ||| ||||| |||||||| ||||| Sbjct 133019222 GCCACCTCTCAAACGGAGAACCAAGTGCAGAGTGGATTCCTTTTGAATGTTATAGTCTGA 133019163 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| ||| | || ||||| ||||| || || || ||||||| |||||||| ||||| Sbjct 133019162 CAGGGTTCGACCATCTTCCAGCTGTTTGCCAGCAAAAATCAACCTTTGTTGGTCTGGAGG 133019103 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || || || ||| |||||| ||| || | | | | || | ||| || Sbjct 133019102 AATGCCTTCTTTATCCTGAATTTTAGCCTTCACATTCTCAATAGTATCACTTGGCTCAAC 133019043 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 || | || || ||||| || || ||||| |||||||| || |||||||| Sbjct 133019042 TTCTAGTGTGATGGTCTTCCCAGTGAGAGTTTTCACAAATATCTGCATGTT 133018992 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| ||||| | | |||| ||| || ||| || ||||| ||||||||||| Sbjct 133020589 CCACCCCTCAAACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGTATGTTGTAGTCAGAG 133020530 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || |||| | || ||||| || || || || || ||||| | ||||||||| ||||| Sbjct 133020529 AGAGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGG 133020470 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||| ||| |||||| ||| || | | | |||| | ||| || Sbjct 133020469 ATTCCTTCCTTATCCTGGATTTTTGCCTTTACATTCTCAATTGTGTCACTGGGCTCAACT 133020410 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | |||||| ||||| || || | ||||||||||| || ||||| Sbjct 133020409 TCAAGGGTAATGGTCTTCCCAGTTAAGGTCTTCACAAATATCTGCAT 133020363 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||||||| | | ||||||||||| ||| ||||||||||| ||||| || | Sbjct 133019449 CCACCTCTCAAACGGAGAACCAAGTGCAGAGTGGATTCCTTCTGAATATTGTAATCAGAC 133019390 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | | || |||| |||||| || || || ||||| | ||||| || || || Sbjct 133019389 AGGGTTCTGCCATCTTCCAATTGTTTGCCAGCAAAGATCAATCTTTGTTGATCAGGGGGA 133019330 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || |||||||| ||||| ||| || | | | | || | | ||| ||| Sbjct 133019329 ATGCCTTCCTTGTCTTGGATTTTGGCCTTGACATTCTCAATAGTATCGCTAGGCTCAACC 133019270 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || | ||||| ||||| || |||| ||||||||||| || |||||| Sbjct 133019269 TCAAGAGTAATTGTCTTCCCTGTCAAGGTCTTCACAAATATCTGCATG 133019222 >seq1 Length=219802468 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| | | | || ||||||| ||| ||| ||||||||||||||||| | Sbjct 160684075 CCACCTCTGAGACGAAGAACTAAGTGCAAGGTGGACTCTTTCTGAATGTTGTAGTCTGAC 160684016 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | | || ||||| || || || || || ||||| | ||| ||||| || || Sbjct 160684015 AGGGTTCTGCCATCTTCCAGCTGCTTACCAGCAAAAATCAATCTCTGCTGGTCAGGGGGA 160683956 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| || ||||| |||||| ||| || | | | |||| | ||||||| Sbjct 160683955 ATACCTTCTTTGTCTTGGATTTTTGCCTTTACATTCTCAATAGTGTCACTTGGCTCCACC 160683896 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||||| ||||| || ||||| ||||||||||| || ||||| Sbjct 160683895 TCAAGAGTAATTGTCTTCCCTGTCAGGGTCTTCACAAATATCTGCAT 160683849 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||||||||| | | | ||||||||||| || ||||||||||| || ||||| Sbjct 160684304 GCCACCTCTGAGACGAAGGACCAAGTGCAGAGTAGATTCCTTCTGAATATTATAGTCTGA 160684245 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| | | || |||| |||||| || || |||||||| | |||||| || || || Sbjct 160684244 CAGGGTTCTTCCATCTTCCAATTGTTTGCCAGCAAATATCAATCTCTGTTGATCAGGGGG 160684185 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || |||||||| ||||| ||| || | | | |||| | ||| || Sbjct 160684184 AATGCCTTCCTTGTCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTTGGCTCAAC 160684125 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||||| ||||| || ||||| ||||||||||| |||||||| Sbjct 160684124 TTCAAGAGTAATTGTCTTCCCTGTCAGGGTCTTCACAAATATTTGCAT 160684077 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || |||||||| | | ||||||||||| ||| ||||| ||||||||||| || | Sbjct 160683847 CCCCCTCTCAAACGGAGAACCAAGTGCAGAGTGGATTCCTTTTGAATGTTGTAATCTGAC 160683788 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || || | || ||||| ||||| || ||||| ||||||| |||||||| || || Sbjct 160683787 AGGGTTCGTCCATCCTCCAGCTGTTTGCCAGCGAAGATCAACCTTTGTTGGTCAGGGGGA 160683728 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || || || || ||||| || || | | | |||| | ||| || Sbjct 160683727 ATGCCTTCTTTATCTTGGATTTTAGCTTTCACATTCTCAATTGTGTCACTTGGCTCAACT 160683668 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 || | || || ||||| || || ||||| |||||||| || |||||||| Sbjct 160683667 TCAAGTGTGATGGTCTTCCCAGTGAGAGTTTTCACAAATATCTGCATGTT 160683618 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| ||||| | | |||| ||| || ||| || ||||||||||||||||| Sbjct 160685443 CCACCCCTCAAACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGAATGTTGTAGTCAGAG 160685384 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || || || || |||||||| | ||| ||||| || || Sbjct 160685383 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAATATCAATCTCTGCTGGTCAGGGGGA 160685324 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||| ||| |||||| ||| || | | | | |||| | || || Sbjct 160685323 ATGCCTTCCTTATCCTGGATTTTTGCCTTTACATTCTCAATGGTGTCACTTGGTTCAACT 160685264 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||||| ||||| || || | ||||| ||||| || ||||| Sbjct 160685263 TCAAGAGTAATGGTCTTCCCAGTTAAGGTCTTGACAAATATCTGCAT 160685217 >seq3 Length=181146889 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| || ||||| || || ||| | || ||||| || || ||||| || Sbjct 29378945 TCCTTCTGGATATTGTAATCACAGAGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCAAAG 29379004 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 ||||||| ||| ||||| ||||| | || || ||||| || ||| || || | Sbjct 29379005 ATCAACCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGGATCTTTGCTTTGACATTC 29379064 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | |||| | ||| ||||||| |||||| |||||||| ||||| || |||||| Sbjct 29379065 TCAATAGTGTCACTTGGCTCTACCTCCAGGGTAATGGTCTTGCCAGTCAGGGTTTTCACA 29379124 Query 45326 AAGATTTGCATG 45337 ||||| |||||| Sbjct 29379125 AAGATCTGCATG 29379136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394555023373693