Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq12 111 2e-19 seq9 107 2e-18 seq10 100 3e-16 >seq12 Length=128359586 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 ||||||||||||| || || ||||| ||||| || | ||| ||||| | || | ||| | Sbjct 109014789 CCTCATCTCTACTGATCAGCTCGTTGGAAAAGGTGAGTCCAGGCATGAGACCCCTTTTCT 109014848 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 ||| ||| || |||||||| || || || || ||||||||||| || ||||||||||| | Sbjct 109014849 TTAGCCAGAAAATTGCAGCAAAGGACCCAGAGAAGAATATTCCTTCTACTGCAGCAAATG 109014908 Query 14346 CTATTAATCGTTCTCC 14361 | | | || |||||| Sbjct 109014909 CCACGACTCTTTCTCC 109014924 >seq9 Length=159361991 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 14228 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 14287 |||||||| ||||||||||| || || || || | ||| ||||||| ||| ||||| || Sbjct 138027422 TCATCTCTGCTAATAAGTTCATTAGAGAAAGTGAGTCCAGGCATCAGTCCACGTTTCTTC 138027363 Query 14288 AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCT 14347 | |||||| || | || ||||| ||||| ||||| || || ||||| |||||||| || Sbjct 138027362 AGCCAAAAAATGGATGCAAATGAACCGGAGAAGAAGATCCCTTCAACAGCAGCAAATGCC 138027303 Query 14348 ATTAATCGTTCTCC 14361 | | |||||| || Sbjct 138027302 ACCACTCGTTCACC 138027289 Score = 102 bits (112), Expect = 8e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 14228 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 14287 |||||||| |||||||||||||| || || || | ||| ||||||| |||||||| || Sbjct 138039858 TCATCTCTGCTAATAAGTTCGTTAGAGAAAGTGAGTCCAGGCATCAGCCCTCGTTTCTTC 138039799 Query 14288 AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14346 | ||| ||||| | ||| ||||| || || || || || || ||||| |||||||| || Sbjct 138039798 AGCCAGAATATGGAAGCAAATGAACCAGAGAAAAAGATCCCTTCAACAGCAGCAAAGGC 138039740 Score = 96.9 bits (106), Expect = 3e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 13895 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13954 || || || || ||||| || || ||||||| |||||| || |||||||||||||| || Sbjct 138029374 TTTGACATGACACCCATCTTCTGGTATTCACCAACTCTCTTCTCAAAGAAGTTAGTCTTT 138029315 Query 13955 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATT 13992 ||||||| || || |||||||| || ||||||||||| Sbjct 138029314 CCTTCCAAAGAGATGTTTTCCATGAAGTCAAATGGATT 138029277 >seq10 Length=136570856 Score = 100 bits (110), Expect = 3e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 13895 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13954 || || ||||| ||||| || || ||||| | |||| | || ||||| |||||||| || Sbjct 119053663 TTGGACATAACACCCATCTTCTGGTATTCTCCAACTTTCTTCTCAAAAAAGTTAGTCTTT 119053604 Query 13955 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACAC 14007 ||||||| ||| || |||||||| || |||||||||||||| | | |||| || Sbjct 119053603 CCTTCCAATGAGATGTTTTCCATGAAGTCAAATGGATTTGTGGCCTTAAAAAC 119053551 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 14228 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 14287 |||||||| ||||||||||| || || || || | ||| ||||||| || ||||| || Sbjct 119052163 TCATCTCTGCTAATAAGTTCATTAGAGAAAGTGAGTCCAGGCATCAGCCCCCGTTTCTTC 119052104 Query 14288 AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCT 14347 | |||||| || | || ||||| || || ||||| || || ||||| |||||||| || Sbjct 119052103 AGCCAAAAAATGGATGCAAATGAGCCAGAGAAGAAAATACCTTCAACAGCAGCAAATGCA 119052044 Query 14348 ATTAATCGTTCTCC 14361 | | |||||| || Sbjct 119052043 ACAACTCGTTCACC 119052030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481694234472440