Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1 114 1e-20 seq2 113 3e-20 >seq1 Length=219802468 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| ||| || || ||||| || ||||| || ||||| | || ||| | | ||| Sbjct 160684289 AAGGACCAAGTGCAGAGTAGATTCCTTCTGAATATTATAGTCTGACAGGGTTCTTCCATC 160684230 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||||||||||||||| ||| | || | ||| |||||||| ||| | ||||||||| || Sbjct 160684229 TTCCAATTGTTTGCCAGCAAATATCAATCTCTGTTGATCAGGGGGAATGCCTTCCTTGTC 160684170 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 |||| ||| || | ||| |||||||| ||||| ||||| || || | Sbjct 160684169 TTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTTGGCTCAACTTCAAGAGTAATTGT 160684110 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || |||| || || ||||| |||||||| Sbjct 160684109 CTTCCCTGTCAGGGTCTTCACAAATATTTGCAT 160684077 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || ||||| |||||||||||||| || | || ||| | ||| Sbjct 160683832 AGAACCAAGTGCAGAGTGGATTCCTTTTGAATGTTGTAATCTGACAGGGTTCGTCCATCC 160683773 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| |||||||| || |||| | |||||||| || ||| | |||||| ||||| Sbjct 160683772 TCCAGCTGTTTGCCAGCGAAGATCAACCTTTGTTGGTCAGGGGGAATGCCTTCTTTATCT 160683713 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 |||| | || || || | ||| ||||||| ||||| ||||| |||||| | Sbjct 160683712 TGGATTT-TAGCTTTCACATTCTCAATTGTGTCACTTGGCTCAACTTCAAGTGTGATGGT 160683654 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 || || || | ||||| ||||| || ||||| || Sbjct 160683653 CTTCCCAGTGAGAGTTTTCACAAATATCTGCATGTT 160683618 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| || || || |||||||| ||||| |||||||| | | || | ||| Sbjct 160684745 AAGGACCAAATGCAGAGTGGATTCTTTCTGAATATTGTAGTCAGAGAGAGTGCGGCCATC 160684686 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||||| || ||||| ||| |||| | ||||||||| || || | ||||||||||| Sbjct 160684685 TTCCAGCTGCTTGCCTGCAAAGATCAATCTTTGTTGGTCAGGAGGAATTCCTTCCTTATC 160684626 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 |||| |||||| | ||| |||||||| ||||| ||||| || ||| | Sbjct 160684625 CTGGATTTTAGCCTTGACATTCTCAATAGTGTCACTTGGCTCAACTTCAAGAGTAATGGT 160684566 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || || || || || ||||| || ||||| Sbjct 160684565 CTTCCCAGTTAAGGTCTTGACAAATATCTGCAT 160684533 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || |||||||| |||||||||||||| | | || | |||| Sbjct 160685428 AGGACCAGGTGGAGGGTGGATTCTTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCT 160685369 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| | || | ||| || || || ||| | |||||||||||| Sbjct 160685368 TCCAGCTGCTTGCCAGCAAATATCAATCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 160685309 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 |||| | ||| || | ||| ||||||| || || ||||| || ||| | Sbjct 160685308 TGGATTTTTGCCTTTACATTCTCAATGGTGTCACTTGGTTCAACTTCAAGAGTAATGGTC 160685249 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || || || || || ||||| || ||||| Sbjct 160685248 TTCCCAGTTAAGGTCTTGACAAATATCTGCAT 160685217 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| || | ||| | || ||||||||||||||||||||||| | | || | ||| Sbjct 160684517 AAGAACTAAGTGCAAGGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGAGTGCGGCCATC 160684458 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||||| || || || ||| | || | ||| || ||||| || | |||||| || || Sbjct 160684457 TTCCAGCTGCTTACCAGCAAAAATCAATCTCTGCTGATCAGGAGGAATGCCTTCTTTGTC 160684398 Query 18233 GGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291 |||| |||| || || | | ||| ||||||| || || ||||| ||| ||| Sbjct 160684397 TTGGATTT-TTGCTTTTACATTTTCAATTGTGTCACTTGGTTCAACTTCAAGGGTAATGG 160684339 Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | || || || || || || ||||| || ||||| Sbjct 160684338 TCTTCCCAGTTAAGGTCTTGACAAATATCTGCAT 160684305 >seq2 Length=179946965 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || ||||| || ||||| ||||| || | || ||| | | |||| Sbjct 133019434 AGAACCAAGTGCAGAGTGGATTCCTTCTGAATATTGTAATCAGACAGGGTTCTGCCATCT 133019375 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||||||||||||| ||| |||| | |||||||||||| ||| | ||||||||| || Sbjct 133019374 TCCAATTGTTTGCCAGCAAAGATCAATCTTTGTTGATCAGGGGGAATGCCTTCCTTGTCT 133019315 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 |||| |||||| | ||| ||| || | ||||| |||| || || | Sbjct 133019314 TGGATTTTGGCCTTGACATTCTCAATAGTATCGCTAGGCTCAACCTCAAGAGTAATTGTC 133019255 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || ||||| || || ||||| || ||||| Sbjct 133019254 TTCCCTGTCAAGGTCTTCACAAATATCTGCAT 133019223 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || ||||| ||||||||||| ||||| | || ||| || |||| Sbjct 133019206 AGAACCAAGTGCAGAGTGGATTCCTTTTGAATGTTATAGTCTGACAGGGTTCGACCATCT 133019147 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| |||||||| ||| | || | |||||||| || || | |||||| ||||| Sbjct 133019146 TCCAGCTGTTTGCCAGCAAAAATCAACCTTTGTTGGTCTGGAGGAATGCCTTCTTTATCC 133019087 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||||| ||| || | ||| ||| |||| ||||| ||| | |||||| | Sbjct 133019086 TGAATTTTAGCCTTCACATTCTCAATAGTATCACTTGGCTCAACTTCTAGTGTGATGGTC 133019027 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 || || || | ||||| ||||| || ||||| || Sbjct 133019026 TTCCCAGTGAGAGTTTTCACAAATATCTGCATGTT 133018992 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| || || ||||||||||| || || |||||||| | | |||| | | |||| Sbjct 133019890 AGAACCAAATGCAGGGTTGATTCTTTCTGTATATTGTAGTCAGATAGTGTTCTCCCATCT 133019831 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| | ||||||||| || ||| | ||||||||| || Sbjct 133019830 TCCAGCTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGGGGAATGCCTTCCTTGTCT 133019771 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 |||| |||||| | ||| ||| |||| ||||| |||| || || | Sbjct 133019770 TGGATTTTGGCCTTGACATTCTCAATAGTATCACTTGGCTCTACCTCAAGAGTAATTGTC 133019711 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || |||| |||||| ||||| || ||||| Sbjct 133019710 TTCCCTGTCAGTGTTTTCACAAATATCTGCAT 133019679 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || |||||||| || ||||||||||| | | || || |||| Sbjct 133020574 AGGACCAGGTGGAGGGTGGATTCTTTCTGTATGTTGTAGTCAGAGAGAGTGCGACCATCT 133020515 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| | ||| ||||| || || | ||||||||||| Sbjct 133020514 TCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGGATTCCTTCCTTATCC 133020455 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 |||| | ||| || | ||| ||||||| |||||| ||||| ||| ||| | Sbjct 133020454 TGGATTTTTGCCTTTACATTCTCAATTGTGTCACTGGGCTCAACTTCAAGGGTAATGGTC 133020395 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || || || || || ||||| || ||||| Sbjct 133020394 TTCCCAGTTAAGGTCTTCACAAATATCTGCAT 133020363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378844535892585