Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq2 107 2e-18 seq1 96.9 3e-15 seq3 84.2 2e-11 >seq2 Length=179946965 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| |||||||| || |||||||| || ||||| || ||| | || || || | || Sbjct 133019907 ATGCAAATATTTGTCAAGACCTTAACTGGTAAAACCATTACCCTTGAAGTTGAGCCAAGT 133019966 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | |||| |||||||| ||||||| | |||||||| | || ||||||| Sbjct 133019967 GACACAATTGAAAATGTTAAGGCAAAAATTCAGGATAAAGAAGGTATTCCCCCTGACCAG 133020026 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || | || || | ||| ||||| |||||||||||| | || || || || | | Sbjct 133020027 CAGAGATTGATTTTTGCTGGCAAGCAACTGGAAGATGGCCGAACCCTGTCAGACTATAAC 133020086 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGT 25040 || |||||||| |||| | || ||||| Sbjct 133020087 ATCCAGAAAGAATCCACCTTGCACTTAGT 133020115 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| |||||||| || || ||||| || || || || ||| | || || ||| | || Sbjct 133020135 ATGCAAATATTTGTCAAGACATTAACTGGGAAGACAATTACCCTTGAGGTTGAACCAAGT 133020194 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | |||| ||| || | ||||| | ||||||||| | || ||||||| Sbjct 133020195 GACACAATTGAAAATGTAAAAGCCAAAATCCAAGACAAAGAAGGCATTCCCCCTGACCAG 133020254 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || | ||||| | ||| || || |||||||||||| || || || || |||| Sbjct 133020255 CAGAGATTAATTTTTGCTGGTAAGCAACTGGAAGATGGCAGAACACTGTCTGACTACAAT 133020314 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGT 25040 || ||||| || |||| || || || || Sbjct 133020315 ATTCAGAAGGAATCCACTCTGCACTTGGT 133020343 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||||||||| || ||||| || || || || || || | || || || | || Sbjct 133019222 CATGCAGATATTTGTGAAGACCTTGACAGGGAAGACAATTACTCTTGAGGTTGAGCCTAG 133019281 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 ||| | | | || | ||| |||| ||||| | || |||||| | || ||| || Sbjct 133019282 CGATACTATTGAGAATGTCAAGGCCAAAATCCAAGACAAGGAAGGCATTCCCCCTGATCA 133019341 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||| | || || | ||| ||||||||| |||||||| || || || ||||||| Sbjct 133019342 ACAAAGATTGATCTTTGCTGGCAAACAATTGGAAGATGGCAGAACCCTGTCTGATTACAA 133019401 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 || ||||| || |||| || || || || | || ||| | || || Sbjct 133019402 TATTCAGAAGGAATCCACTCTGCACTTGGTTCTCCGTTTGAGAGGTGG 133019449 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||||||||| || |||||||| || || || || ||| | || || || | || Sbjct 133020363 ATGCAGATATTTGTGAAGACCTTAACTGGGAAGACCATTACCCTTGAAGTTGAGCCCAGT 133020422 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | || | ||| |||| |||||| | || ||||| | || |||||| Sbjct 133020423 GACACAATTGAGAATGTAAAGGCAAAAATCCAGGATAAGGAAGGAATCCCTCCTGACCAA 133020482 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || | || || | ||| ||||| || ||||||||| ||| | || |||| | Sbjct 133020483 CAGAGATTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACTCTCTCTGACTACAAC 133020542 Query 25012 ATACAGAAAGAGGCCACGCTTCA 25034 ||||||||||| |||| || || Sbjct 133020543 ATACAGAAAGAATCCACCCTCCA 133020565 >seq1 Length=219802468 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||||||||| || |||||||| || || || || || | || || ||| | || Sbjct 160685217 ATGCAGATATTTGTCAAGACCTTAACTGGGAAGACCATTACTCTTGAAGTTGAACCAAGT 160685276 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | || | ||| |||| |||||| | || |||||| | || ||||||| Sbjct 160685277 GACACCATTGAGAATGTAAAGGCAAAAATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 160685336 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || | || |||| ||| ||||| || ||||||||| | ||| | || |||| | Sbjct 160685337 CAGAGATTGATATTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTCTCTGACTACAAC 160685396 Query 25012 ATACAGAAAGAGGCCACGCTTCA 25034 || |||||||| |||| || || Sbjct 160685397 ATTCAGAAAGAATCCACCCTCCA 160685419 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||||||||| || |||||||| || || || || ||| | || || ||| | || Sbjct 160684304 CATGCAGATATTTGTCAAGACCTTAACTGGGAAGACCATTACCCTTGAAGTTGAACCAAG 160684363 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 |||| | |||| ||| || | |||||| | ||||||||| | || ||| || Sbjct 160684364 TGACACAATTGAAAATGTAAAAGCAAAAATCCAAGACAAAGAAGGCATTCCTCCTGATCA 160684423 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||| | || || | ||| || || || ||||||||| | ||| | || |||| Sbjct 160684424 GCAGAGATTGATTTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAA 160684483 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGT 25040 ||| || ||||| |||| | || ||||| Sbjct 160684484 CATTCAAAAAGAATCCACCTTGCACTTAGT 160684513 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||||||||| || ||| | || || || || || || | || || || | || Sbjct 160683849 ATGCAGATATTTGTGAAGACCCTGACAGGGAAGACAATTACTCTTGAGGTGGAGCCAAGT 160683908 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | | || | ||| |||| |||||| | |||||||| | || ||||||| Sbjct 160683909 GACACTATTGAGAATGTAAAGGCAAAAATCCAAGACAAAGAAGGTATTCCCCCTGACCAG 160683968 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || | || || | ||| || || || ||||||||| || || || || |||| | Sbjct 160683969 CAGAGATTGATTTTTGCTGGTAAGCAGCTGGAAGATGGCAGAACCCTGTCAGACTACAAC 160684028 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGT 25040 || ||||||||| |||| | || ||||| Sbjct 160684029 ATTCAGAAAGAGTCCACCTTGCACTTAGT 160684057 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||||||||| ||||| | ||||| || || || || | || || ||| | || Sbjct 160684989 ATGCAGATATTTGTGAAAACACTGACCGGGAAGACAATTACTCTAGAAGTTGAACCAAGT 160685048 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | || | |||||||| |||||| | ||||||||| | || ||| || Sbjct 160685049 GACACCATTGAGAATGTTAAGGCAAAAATCCAAGACAAAGAAGGCATTCCCCCTGATCAA 160685108 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || | || || | ||| || || || ||||||||| | ||| | ||||||| | Sbjct 160685109 CAGAGATTGATTTTTGCTGGGAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 160685168 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGT 25040 || || |||||| |||| | || ||||| Sbjct 160685169 ATTCAAAAAGAGTCCACCTTGCACTTAGT 160685197 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||||||||| || |||||||| || || || || || | || || || | || Sbjct 160684533 ATGCAGATATTTGTCAAGACCTTAACTGGGAAGACCATTACTCTTGAAGTTGAGCCAAGT 160684592 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | | || | ||| |||| ||||| | || ||||| | || |||||| Sbjct 160684593 GACACTATTGAGAATGTCAAGGCTAAAATCCAGGATAAGGAAGGAATTCCTCCTGACCAA 160684652 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 ||| | || || | ||| ||||| || ||||||||| | ||| | || |||| Sbjct 160684653 CAAAGATTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTCTCTGACTACAAT 160684712 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGT 25040 || |||||||| |||| || ||||| || Sbjct 160684713 ATTCAGAAAGAATCCACTCTGCATTTGGT 160684741 >seq3 Length=181146889 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 24829 ATCATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCG 24888 ||||||||||| ||||| |||||| | || ||||| || || ||| | || || || | Sbjct 29379138 ATCATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATTACCCTGGAGGTAGAGCCA 29379079 Query 24889 AGCGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948 || |||| | | || | ||| || | ||| || | ||||||||| | || ||| Sbjct 29379078 AGTGACACTATTGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGCATTCCTCCAGAC 29379019 Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTAC 25008 ||||| | || || | ||| ||||| || ||||||||| || | |||||| Sbjct 29379018 CAGCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTCTGTGATTAC 29378959 Query 25009 AGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 | || ||||| || |||| |||||| | ||| | || || | || ||| Sbjct 29378958 AATATCCAGAAGGAATCCACCCTTCATCTTGTGCTTCGTCTGAGGGGTGGT 29378908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417753239123360