Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3 104 2e-17 seq4 100 3e-16 seq10 95.1 1e-14 seq1 95.1 1e-14 seq2 82.4 7e-11 >seq3 Length=181146889 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 23063 GTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGG 23122 |||||||| ||||| || || || || || || || || || ||||||| || ||| Sbjct 172430371 GTGTACTCCACAATCTCTGTGCACAGGTTACTGCATTTAATGGTGCCCAGGTTCTGCTGA 172430312 Query 23123 TTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGC 23182 ||||| || || ||||| | ||||||||| ||||||||||| ||||| ||||| |||| Sbjct 172430311 TTGCTCTTGCGGTTGCAGGCATCCTTGTACAGCATGTACGGAGTGCCAGTCTCAGTCTGC 172430252 Query 23183 GACTCGATGATCGCTCGCCA 23202 ||||| || || || |||| Sbjct 172430251 GACTCTATAATGGCATGCCA 172430232 Score = 100 bits (110), Expect = 3e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 23338 ATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGC 23397 ||| || || ||| ||||||| ||||| |||||||| | || ||||| || || | ||| Sbjct 172428933 ATTCTCTACACGTTTCATAAAGAGATCAGGTATCCACATGGCATAGAATAGATCCCTGGC 172428874 Query 23398 GCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATG 23457 | | |||||| || || ||||||||||| | |||| || || ||||| || ||| Sbjct 172428873 TCTCTGCTCCTCCTTTCCAGTGTTCTTTTTTAGGTCCAGGAAATCAAACACATCATAATG 172428814 Query 23458 CCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 |||||| || || || | |||||| || || || |||| Sbjct 172428813 CCACGGTTCCAGATATATGGCAAATGCACCAGGCCTCT 172428776 >seq4 Length=159726490 Score = 100 bits (110), Expect = 3e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 23338 ATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGC 23397 ||| || || ||| ||||||| |||||||||||||| | || ||||| || || | ||| Sbjct 158380750 ATTCTCTACACGTTTCATAAAGAGATCCGGTATCCACATGGCATAGAATAGATCCCTGGC 158380809 Query 23398 GCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATG 23457 | | |||||| || || || |||||||| | |||| || || ||||| || ||| Sbjct 158380810 TCTCTGCTCCTCCTTTCCAGTATTCTTTTTTAGGTCCAGGAATTCAAACACATCATAATG 158380869 Query 23458 CCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||| || || ||||| | |||||| || || || |||| Sbjct 158380870 CCAAGGTTCCAGGTATATGGCAAATGCACCAGGCCTCT 158380907 >seq10 Length=136570856 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566 ||||||||||||||| | || ||||| | ||||||||| || || || || |||||| Sbjct 119049981 GATGAACCACTTTTGAAGGATAATCCACATAGATTTGTGATCTTCCCCATCCAATATCAT 119050040 Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTA 57623 ||||| ||| | |||||||| || |||||||| || || ||||| | || || ||| Sbjct 119050041 GACATCTGGCAAATGTACAAGAAAGCAGAAGCTTCATTCTGGACTGCTGAGGAGGTA 119050097 >seq1 Length=219802468 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| |||||||| || || || || | || ||||| || Sbjct 160684077 ATGCAAATATTTGTGAAGACCCTGACAGGGAAGACAATTACTCTTGAAGTTGAGCCAAGT 160684136 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | || || | ||| |||||||||||| | || || || || Sbjct 160684137 GACACTATTGAGAATGTAAAGGCCAAAATCCAAGACAAGGAAGGCATTCCCCCTGATCAA 160684196 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | ||||| ||||||||||| |||||||| | || || || ||||| Sbjct 160684197 CAGAGATTGATATTTGCTGGCAAACAATTGGAAGATGGAAGAACCCTGTCAGACTATAAT 160684256 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || ||||| ||||| || |||| ||| | || || || || Sbjct 160684257 ATTCAGAAGGAATCTACTCTGCACTTGGTCCTTCGTCTCAGAGGTGG 160684303 >seq2 Length=179946965 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || || || || ||||| || || || || ||||| | || ||||| || Sbjct 133018992 AACATGCAGATATTTGTGAAAACTCTCACTGGGAAGACCATCACACTAGAAGTTGAGCCA 133019051 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || | | | || | || || | ||| ||| || |||||| | || || ||| Sbjct 133019052 AGTGATACTATTGAGAATGTGAAGGCTAAAATTCAGGATAAAGAAGGCATTCCTCCAGAC 133019111 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || || | | || || |||||||||||| ||||||| | || || || ||| Sbjct 133019112 CAACAAAGGTTGATTTTTGCTGGCAAACAGCTGGAAGATGGTCGAACCCTGTCAGACTAT 133019171 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||||||||| ||||| ||||| || |||| || Sbjct 133019172 AACATTCAAAAGGAATCCACTCTGCACTTGGTTCT 133019206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445164431481360