Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq9 120 4e-22 seq4 120 4e-22 seq3 118 1e-21 seq10 107 2e-18 seq12 105 8e-18 seq11 96.9 4e-15 >seq9 Length=159361991 Score = 120 bits (132), Expect = 4e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| ||||| | ||||||||| || |||||||| ||||| || || || || || Sbjct 138039858 TCATCTCTGCTAATAAGTTCGTTAGAGAAAGTGAGTCCAGGCATCAGCCCTCGTTTCTTC 138039799 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33725 ||||| ||||||||||| ||||| || || || ||||| ||||| || ||||||||||| Sbjct 138039798 AGCCAGAATATGGAAGCAAATGAACCAGAGAAAAAGATCCCTTCAACAGCAGCAAAGGCC 138039739 Query 33726 ATAAGTCTCTCTCC 33739 | ||| | ||| || Sbjct 138039738 ACAAGGCGCTCGCC 138039725 Score = 95.1 bits (104), Expect = 2e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139 || ||||| | ||||| ||||| || ||||| || || ||||| | ||||||||||||| Sbjct 138025044 ACCTCTTCAGCAGTCCAGAATGAAGCTTCTGCTTTCTTGTACATTTGCCAGATGTCATGA 138024985 Query 34140 TATTGGATTGGGAAAATAACAAATCTATTTGGATT 34174 || ||||| ||||| || |||||||||| |||||| Sbjct 138024984 TACTGGATGGGGAAGATCACAAATCTATGTGGATT 138024950 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/139 (75%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 33235 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 33291 ||||||||||| | || | | ||| || |||| | | ||||| || ||||| | Sbjct 138029415 TTTAAAAGTCAGCGTCCAGTGTGAAAGTGTTATCTTTTGGCTTTGACATGACACCCATCT 138029356 Query 33292 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33351 | ||||||||||| || | || || || || ||||| ||||||||||| || || |||| Sbjct 138029355 TCTGGTATTCACCAACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAAAGAGATGTTTT 138029296 Query 33352 CCATGAAATCAAACGGATT 33370 ||||||| ||||| ||||| Sbjct 138029295 CCATGAAGTCAAATGGATT 138029277 Score = 91.5 bits (100), Expect = 2e-13 Identities = 105/140 (75%), Gaps = 5/140 (4%) Strand=Plus/Minus Query 33235 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTT----CTTGAGACATAACTCCCATT 33290 ||||||||||| ||| || || || ||||| || |||| | ||| || ||||| Sbjct 138044454 TTTAAAAGTCAGCATTTAGAGTGAATTGATTTTCCGTGGCCTTG-GCCATGACACCCATC 138044396 Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 || ||||||||||| || || || || ||||| || |||||||| || || || ||| Sbjct 138044395 TTCTGGTATTCACCAACTTTCTTCTCAAAGAAATTGGTCTTTCCTTCTAAGGAGATGTTT 138044336 Query 33351 TCCATGAAATCAAACGGATT 33370 |||||||| ||||| ||||| Sbjct 138044335 TCCATGAAGTCAAATGGATT 138044316 Score = 86.0 bits (94), Expect = 8e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 ||| |||| ||| || || |||| |||||| |||||||| ||||||||||| || || || Sbjct 138038979 ATCCTTAATATATGTGTCAATCAGAAGACTGTACATTTCAGAATGAATGTTCTCCATTGC 138038920 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 33946 || ||||| || || || || | | ||||||| | |||||||| Sbjct 138038919 AATTTGAAAACCATAAAAGCAGCGAACCTCGGTTACTTGCACTTC 138038875 >seq4 Length=159726490 Score = 120 bits (132), Expect = 4e-22 Identities = 131/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 ||||||||| ||| ||||| |||||||| | || || | ||||| | || || |||| Sbjct 158384213 CACTAAATATTTTCTTTGTCTCCTTGTGCAAGTTAGAAACAGCTATGCGAGCAGCCAGAA 158384272 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125 ||||||| || ||||||| ||| || ||||||||| | || |||||||| || |||| Sbjct 158384273 TGGCATAGTCTGGATGTTTTGTTGTCAGGGTGGCTGCTGTCTCCGCTGCCAGGGTATCCA 158384332 Query 64126 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTT 64179 |||| ||||| |||||| | || | || ||||| || ||||||| |||| Sbjct 158384333 GCTCTATAGTTGTGACTCCACTGTAAAGACCCTGAATTACTTTCATAGTAATTT 158384386 Score = 118 bits (130), Expect = 1e-21 Identities = 117/149 (79%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATG 63325 || ||||||||||||||||| || ||||| | || ||| |||||||| || | ||| || Sbjct 158380757 ACACGTTTCATAAAGAGATCCGGTATCCACATGGC-ATAGAATAGATCCCTGGCTCTCTG 158380815 Query 63326 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63385 ||||| ||||| ||||||||||| || || ||||| | | | |||| ||||||| || Sbjct 158380816 CTCCTCCTTTCCAGTATTCTTTTTTAGGTCCAGGAATTCAAACACATCATAATGCCAAGG 158380875 Query 63386 TTCCAAGTATATGGCCATAACTCCAGGCC 63414 ||||| ||||||||| | | ||||||| Sbjct 158380876 TTCCAGGTATATGGCAAATGCACCAGGCC 158380904 Score = 102 bits (112), Expect = 1e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446 ||| ||||| || ||||| | ||||| || ||||| ||||| |||||||| || || | Sbjct 158378022 TACCTGGAACTCGCCAGAAAGGACTCTGCGTGTGTATATATTGCTGGTATATGGCTCAAT 158378081 Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506 || |||||||| |||| ||||||||||| || ||||| |||||||| |||| | || Sbjct 158378082 AGATTCATTATTGCCCAGGATTTGAGCAGTGGAAGCAGTGGGCATAGGAGCCAGAAGCAA 158378141 Query 62507 ACTATTTCT 62515 ||| || || Sbjct 158378142 ACTGTTCCT 158378150 Score = 96.9 bits (106), Expect = 4e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 62620 ATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATG 62679 ||||| |||| || |||||||| || || || || |||| ||| || | || | || Sbjct 158378814 ATCCTTCATACGTTTCATATGGACCAAGCTCCTTGGCCAGTTCACAGCTAGATTCCAGTG 158378873 Query 62680 CACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAA 62739 || | ||||||||||| ||||| || | ||||||||| ||| || | | || |||| Sbjct 158378874 CAGCATAATAAATGGTCTCAAATATTTGCTTATTTAGCATTTGAGCCTTCTCACTCTCAA 158378933 Query 62740 ATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTC 62799 |||| || | | ||| ||||| || || || | || || || ||||| |||||||| | Sbjct 158378934 ATGGGTATCTCATGAGGATAAAAGCATCTGCCAGGCCCTGCACCCCAATCCCGATAGGCC 158378993 Query 62800 TATGTCTCTTATTAGA 62815 || |||| || || Sbjct 158378994 GGTGCTTCTTGTTGGA 158379009 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 62997 ATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG 63056 ||||| ||||| || ||||| || || || || || | || || ||||| ||||| | Sbjct 158379692 ATCTCTGTGCACAGGTTACTGCATTTAATGGTGCCCAGGTTCTGCTGATTGCTCTTGCGG 158379751 Query 63057 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 63116 || || ||||||||||| || || | ||||| ||||| ||| |||| || |||||||| Sbjct 158379752 TTGCAGGCATCCTTATAGAGCATATAGGGAGTGCCAGTCTCAGTCTGTGACTCTATAATG 158379811 Query 63117 GCTTTCCAGAC 63127 || | ||| || Sbjct 158379812 GCATACCATAC 158379822 Score = 86.0 bits (94), Expect = 8e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 || || ||||| || | ||||||||||| ||||| ||||||||||| || | |||||| Sbjct 158382226 GTACCAGCATTGAACAGTGTAGGAGAAGCATGCGTGAACCATTTTTCTGACAACAGATTG 158382285 Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782 || || || ||||| | || ||||| || ||| || || || | || | ||| | | Sbjct 158382286 TAGGTTTCGATAGCAGCATCAATATCAGTTTTATGTATACCAACAGATACCCTCATCAGC 158382345 Query 63783 ATGTGCTGAGGTCTTTCAACAA 63804 ||||| || || | |||| ||| Sbjct 158382346 ATGTGTTGTGGCCGTTCAGCAA 158382367 >seq3 Length=181146889 Score = 118 bits (130), Expect = 1e-21 Identities = 117/149 (79%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATG 63325 || |||||||||||||||||||| ||||| | || ||| |||||||| || | ||| || Sbjct 172428926 ACACGTTTCATAAAGAGATCAGGTATCCACATGGC-ATAGAATAGATCCCTGGCTCTCTG 172428868 Query 63326 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63385 ||||| ||||| || |||||||| || || ||||| | | | |||| |||||||||| Sbjct 172428867 CTCCTCCTTTCCAGTGTTCTTTTTTAGGTCCAGGAAATCAAACACATCATAATGCCACGG 172428808 Query 63386 TTCCAAGTATATGGCCATAACTCCAGGCC 63414 ||||| |||||||| | | ||||||| Sbjct 172428807 TTCCAGATATATGGCAAATGCACCAGGCC 172428779 Score = 107 bits (118), Expect = 2e-18 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 |||||||| ||| |||||||||||||| || || || | |||| | || || |||| Sbjct 172424806 CACTAAATGTTTTCTTTGTTTCCTTGTGCAGGTTGGAAACAGCTACGCGAGCAGCCAGAA 172424747 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125 |||||||||| ||||||| || || |||||||| | || ||||| || ||||||| Sbjct 172424746 TGGCATAATCTGGATGTTTAGTTGTCAGGGTGGCTGCCGTCTCCGCTGCAAGTGTGTCCA 172424687 Query 64126 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTT 64179 |||| ||||| || ||| | || | || || || || ||||||| |||| Sbjct 172424686 GCTCTATAGTTGTGACCCCACTGTAAAGACCCTGTATTACTTTCATAGTAATTT 172424633 Score = 93.3 bits (102), Expect = 5e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446 ||| ||||| |||||||| | ||||| || ||||| ||||| |||||||| || || | Sbjct 172440459 TACCTGGAACTCTCCAGAGAGGACTCTGCGTGTGTATATATTGCTGGTATATGGCTCAAT 172440400 Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506 || |||||||| |||| ||||||||||| || || || ||||| || || | | || Sbjct 172440399 GGATTCATTATTGCCCAGGATTTGAGCAGTGGAAGCTGTGGGCATTGGAGCAAGAAGCAA 172440340 Query 62507 ACTATTTCT 62515 ||| || || Sbjct 172440339 ACTGTTCCT 172440331 Score = 82.4 bits (90), Expect = 1e-10 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 || || ||||| || | || |||||||| || || |||||||||||||| | |||||| Sbjct 172427172 GTACCAGCATTGAACAGTGTGGGAGAAGCATGTGTGAACCATTTTTCAGACAACAGATTG 172427113 Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782 || || |||||||||| || || || || ||| || || || | || | ||| | | Sbjct 172427112 TAGGTTTCAATAGCTGCATCAATGTCAGTTTTATGGATGCCAACGGATACCCTCATCAGC 172427053 Query 63783 ATGTGCTGAGGTC 63795 ||||| || |||| Sbjct 172427052 ATGTGTTGTGGTC 172427040 >seq10 Length=136570856 Score = 107 bits (118), Expect = 2e-18 Identities = 110/142 (77%), Gaps = 5/142 (4%) Strand=Plus/Minus Query 33236 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTT----CTTGAGACATAACTCCCATTT 33291 ||| |||||| |||| | | |||| ||||||| |||| |||||||| ||||| | Sbjct 119053703 TTAGAAGTCAGCATCCAGTGTAAAAGTGTTGTCTTTTGCCTTG-GACATAACACCCATCT 119053645 Query 33292 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33351 | |||||||| || || || || ||||| ||||| |||||||||||||| || |||| Sbjct 119053644 TCTGGTATTCTCCAACTTTCTTCTCAAAAAAGTTAGTCTTTCCTTCCAATGAGATGTTTT 119053585 Query 33352 CCATGAAATCAAACGGATTGGT 33373 ||||||| ||||| ||||| || Sbjct 119053584 CCATGAAGTCAAATGGATTTGT 119053563 Score = 96.9 bits (106), Expect = 4e-15 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 34092 GTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGG 34151 ||||| ||||| || ||||| || || ||||| | ||||||||||||||||||||| ||| Sbjct 119050084 GTCCAGAATGAAGCTTCTGCTTTCTTGTACATTTGCCAGATGTCATGATATTGGATGGGG 119050025 Query 34152 AAAATAACAAATCTATTTGGATT 34174 || || |||||||||| |||||| Sbjct 119050024 AAGATCACAAATCTATGTGGATT 119050002 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||||||||| || || || | ||| || |||||||| |||||||| || || || || Sbjct 119051263 ATCTTTAACATAGGTGTCAATAAGAAGGCTGTACATTTCTGAATGAATATTCTCCATTGC 119051204 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAA 33955 || || || || || || || | |||||| |||| ||||||||| | | ||| Sbjct 119051203 AATTTGGAAGCCATAAAAGCAGCGAGCCTCTGTAACTTGCACTTCTTTGCTAAA 119051150 >seq12 Length=128359586 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| |||||||| || | ||||| ||||| |||||||| ||||| || || | || | Sbjct 109014789 CCTCATCTCTACTGATCAGCTCGTTGGAAAAGGTGAGTCCAGGCATGAGACCCCTTTTCT 109014848 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || || | ||| || || || || ||||| |||||||||||||||||||| | Sbjct 109014849 TTAGCCAGAAAATTGCAGCAAAGGACCCAGAGAAGAATATTCCTTCTACTGCAGCAAATG 109014908 Query 33724 CAATAAGTCTCTCTCC 33739 | | | ||| ||||| Sbjct 109014909 CCACGACTCTTTCTCC 109014924 >seq11 Length=155008753 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 ||||||||||||| || | ||||| ||||| |||||||| ||||| || || | || | Sbjct 132627298 CCTCGTCTCTACTGATCAGCTCGTTGGAAAAGGTGAGTCCAGGCATGAGACCCCTTTTCT 132627357 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || || | ||| || || || || || || |||||||||||||| | ||| | Sbjct 132627358 TCAGCCAGAAAATTGCAGCAAAGGAGCCAGAGAAAAATATTCCTTCTACTGCGGAAAATG 132627417 Query 33724 CAATAAGTCTCTC 33736 | | | |||||| Sbjct 132627418 CCACCACTCTCTC 132627430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628967086440240