Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq9 114 1e-20 seq12 111 1e-19 seq10 111 1e-19 seq4 98.7 9e-16 seq3 95.1 1e-14 seq11 93.3 4e-14 >seq9 Length=159361991 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || ||||||||||| || || | ||| ||||||| ||| ||||| | Sbjct 138027424 CTTCATCTCTGCTAATAAGTTCATTAGAGAAAGTGAGTCCAGGCATCAGTCCACGTTTCT 138027365 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 | | |||||| || | ||||||||||| || ||||| || || || ||||| ||||||| Sbjct 138027364 TCAGCCAAAAAATGGATGCAAATGAACCGGAGAAGAAGATCCCTTCAACAGCAGCAAATG 138027305 Query 11772 CTACTACTCTTTCTCC 11787 | || |||| ||| || Sbjct 138027304 CCACCACTCGTTCACC 138027289 Score = 102 bits (112), Expect = 8e-17 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || ||||| ||||| || || | ||| ||||||| |||||||| | Sbjct 138039860 CTTCATCTCTGCTAATAAGTTCGTTAGAGAAAGTGAGTCCAGGCATCAGCCCTCGTTTCT 138039801 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 | | ||| ||||| | ||||||||||||||| || || || || || ||||| ||||| | Sbjct 138039800 TCAGCCAGAATATGGAAGCAAATGAACCAGAGAAAAAGATCCCTTCAACAGCAGCAAAGG 138039741 Query 11772 CTAC 11775 | || Sbjct 138039740 CCAC 138039737 >seq12 Length=128359586 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || |||||||| || || || || ||||| || | ||| ||||| | || | ||| ||| Sbjct 109014791 TCATCTCTACTGATCAGCTCGTTGGAAAAGGTGAGTCCAGGCATGAGACCCCTTTTCTTT 109014850 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || |||||||| || ||||| ||||||||||| || || || |||||||| Sbjct 109014851 AGCCAGAAAATTGCAGCAAAGGACCCAGAGAAGAATATTCCTTCTACTGCAGCAAATGCC 109014910 Query 11774 ACTACTCTTTCTCC 11787 || ||||||||||| Sbjct 109014911 ACGACTCTTTCTCC 109014924 >seq10 Length=136570856 Score = 111 bits (122), Expect = 1e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || ||||||||||| || || | ||| ||||||| || ||||| | Sbjct 119052165 CTTCATCTCTGCTAATAAGTTCATTAGAGAAAGTGAGTCCAGGCATCAGCCCCCGTTTCT 119052106 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 | | |||||| || | |||||||| ||||| ||||| || || || ||||| ||||||| Sbjct 119052105 TCAGCCAAAAAATGGATGCAAATGAGCCAGAGAAGAAAATACCTTCAACAGCAGCAAATG 119052046 Query 11772 CTACTACTCTTTCTCC 11787 | || |||| ||| || Sbjct 119052045 CAACAACTCGTTCACC 119052030 >seq4 Length=159726490 Score = 98.7 bits (108), Expect = 9e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472 || || || || || | ||||||||| ||||| ||||||||||||| ||||| ||| Sbjct 158382226 GTACCAGCATTGAACAGTGTAGGAGAAGCATGCGTGAACCATTTTTCTGACAACAGATTG 158382285 Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532 || ||||| || || |||| |||||| || ||||| | |||||||||||| ||| Sbjct 158382286 TAGGTTTCGATAGCAGCATCAATATCAGTTTTATGTATACCAACAGATACCCTCATCAGC 158382345 Query 38533 ATATGTTGTGGTCTTTC 38549 || |||||||| | ||| Sbjct 158382346 ATGTGTTGTGGCCGTTC 158382362 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 ||||| || || ||||| | ||||| | ||| ||||||||||| |||||||| ||||| Sbjct 158378023 ACCTGGAACTCGCCAGAAAGGACTCTGCGTGTGTATATATTGCTGGTATATGGCTCAATA 158378082 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 || |||||||| | | ||||||| || || ||||| ||||| || || | || | Sbjct 158378083 GATTCATTATTGCCCAGGATTTGAGCAGTGGAAGCAGTGGGCATAGGAGCCAGAAGCAAA 158378142 Query 37258 CTATTTCTCAATCCATGT 37275 || || || | |||||| Sbjct 158378143 CTGTTCCTGATGCCATGT 158378160 >seq3 Length=181146889 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 ||||| || |||||||| | ||||| | ||| ||||||||||| |||||||| |||||| Sbjct 172440458 ACCTGGAACTCTCCAGAGAGGACTCTGCGTGTGTATATATTGCTGGTATATGGCTCAATG 172440399 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGC 37247 || |||||||| | | ||||||| || || || || |||||||| || Sbjct 172440398 GATTCATTATTGCCCAGGATTTGAGCAGTGGAAGCTGTGGGCATTGGAGC 172440349 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472 || || || || || | ||| ||||| |||||| ||||||||||||| ||||| ||| Sbjct 172427172 GTACCAGCATTGAACAGTGTGGGAGAAGCATGTGTGAACCATTTTTCAGACAACAGATTG 172427113 Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532 || ||||| || | |||| || ||| || || || | ||||||||||| ||| Sbjct 172427112 TAGGTTTCAATAGCTGCATCAATGTCAGTTTTATGGATGCCAACGGATACCCTCATCAGC 172427053 Query 38533 ATATGTTGTGGTC 38545 || |||||||||| Sbjct 172427052 ATGTGTTGTGGTC 172427040 >seq11 Length=155008753 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 ||||||||||| || || || || ||||| || | ||| ||||| | || | ||| || Sbjct 132627300 TCGTCTCTACTGATCAGCTCGTTGGAAAAGGTGAGTCCAGGCATGAGACCCCTTTTCTTC 132627359 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || |||||||| || ||||| || |||||||| || || || | |||||| Sbjct 132627360 AGCCAGAAAATTGCAGCAAAGGAGCCAGAGAAAAATATTCCTTCTACTGCGGAAAATGCC 132627419 Query 11774 ACTACTCTTTC 11784 || ||||| || Sbjct 132627420 ACCACTCTCTC 132627430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467892098253520