Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq4 122 1e-22 seq3 122 1e-22 seq12 111 2e-19 seq11 105 9e-18 seq10 98.7 1e-15 seq9 95.1 2e-14 seq5 89.7 7e-13 >seq4 Length=159726490 Score = 122 bits (134), Expect = 1e-22 Identities = 118/149 (79%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATG 66118 || ||||||||||||||||| || ||||| | || ||| |||| ||| |||| ||| || Sbjct 158380757 ACACGTTTCATAAAGAGATCCGGTATCCACATGGC-ATAGAATAGATCCCTGGCTCTCTG 158380815 Query 66119 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178 ||||| ||||| ||||||||||| || || ||||| | | | |||||||||||| || Sbjct 158380816 CTCCTCCTTTCCAGTATTCTTTTTTAGGTCCAGGAATTCAAACACATCATAATGCCAAGG 158380875 Query 66179 TTCCAAGTATATGGCCATAACTCCAGGCC 66207 ||||| ||||||||| | | ||||||| Sbjct 158380876 TTCCAGGTATATGGCAAATGCACCAGGCC 158380904 Score = 102 bits (112), Expect = 1e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 65180 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 65239 ||| || || || ||||| | ||||| || ||||| ||||| |||||||| || || | Sbjct 158378022 TACCTGGAACTCGCCAGAAAGGACTCTGCGTGTGTATATATTGCTGGTATATGGCTCAAT 158378081 Query 65240 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 65299 ||| |||||||| |||| ||||||||||| || ||||| |||||||| |||| | || Sbjct 158378082 AGATTCATTATTGCCCAGGATTTGAGCAGTGGAAGCAGTGGGCATAGGAGCCAGAAGCAA 158378141 Query 65300 ACTATTTCT 65308 ||| || || Sbjct 158378142 ACTGTTCCT 158378150 Score = 96.9 bits (106), Expect = 5e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 65413 ATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG 65472 ||||| |||| || || ||||| || || || || |||||||| || | || | || Sbjct 158378814 ATCCTTCATACGTTTCATATGGACCAAGCTCCTTGGCCAGTTCACAGCTAGATTCCAGTG 158378873 Query 65473 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAA 65532 || | ||||||||||| || || || | ||||||||| ||| || | | || |||| Sbjct 158378874 CAGCATAATAAATGGTCTCAAATATTTGCTTATTTAGCATTTGAGCCTTCTCACTCTCAA 158378933 Query 65533 ATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTC 65592 |||| || | | ||| ||||| || ||||| | || || || ||||| |||||||| | Sbjct 158378934 ATGGGTATCTCATGAGGATAAAAGCATCTGCCAGGCCCTGCACCCCAATCCCGATAGGCC 158378993 Query 65593 TATGTCTCTTATTAGA 65608 || |||| || || Sbjct 158378994 GGTGCTTCTTGTTGGA 158379009 Score = 93.3 bits (102), Expect = 6e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 65790 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 65849 ||||| ||||| || ||||| || || ||||| || | || || ||||| ||||| | Sbjct 158379692 ATCTCTGTGCACAGGTTACTGCATTTAATGGTGCCCAGGTTCTGCTGATTGCTCTTGCGG 158379751 Query 65850 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 65909 || || ||||||||||| || || | ||||| ||||| ||| |||| || |||||||| Sbjct 158379752 TTGCAGGCATCCTTATAGAGCATATAGGGAGTGCCAGTCTCAGTCTGTGACTCTATAATG 158379811 Query 65910 GCTTTCCAGAC 65920 || | ||| || Sbjct 158379812 GCATACCATAC 158379822 >seq3 Length=181146889 Score = 122 bits (134), Expect = 1e-22 Identities = 118/149 (79%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATG 66118 || |||||||||||||||||||| ||||| | || ||| |||| ||| |||| ||| || Sbjct 172428926 ACACGTTTCATAAAGAGATCAGGTATCCACATGGC-ATAGAATAGATCCCTGGCTCTCTG 172428868 Query 66119 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178 ||||| ||||| || |||||||| || || ||||| | | | ||||||||||||||| Sbjct 172428867 CTCCTCCTTTCCAGTGTTCTTTTTTAGGTCCAGGAAATCAAACACATCATAATGCCACGG 172428808 Query 66179 TTCCAAGTATATGGCCATAACTCCAGGCC 66207 ||||| |||||||| | | ||||||| Sbjct 172428807 TTCCAGATATATGGCAAATGCACCAGGCC 172428779 Score = 107 bits (118), Expect = 3e-18 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||||||| ||| |||||||| ||||| || || || || |||| | ||| || | || Sbjct 172424806 CACTAAATGTTTTCTTTGTTTCCTTGTGCAGGTTGGAAACAGCTACGCGAGCAGCCAGAA 172424747 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 |||||||||| ||||||| || || |||||||| | || ||||| || ||||||| Sbjct 172424746 TGGCATAATCTGGATGTTTAGTTGTCAGGGTGGCTGCCGTCTCCGCTGCAAGTGTGTCCA 172424687 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 66972 |||| ||||| || ||| | || | || || || || ||||||| |||| Sbjct 172424686 GCTCTATAGTTGTGACCCCACTGTAAAGACCCTGTATTACTTTCATAGTAATTT 172424633 Score = 89.7 bits (98), Expect = 7e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 65180 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 65239 ||| || || |||||||| | ||||| || ||||| ||||| |||||||| || || | Sbjct 172440459 TACCTGGAACTCTCCAGAGAGGACTCTGCGTGTGTATATATTGCTGGTATATGGCTCAAT 172440400 Query 65240 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 65299 || |||||||| |||| ||||||||||| || || || ||||| || || | | || Sbjct 172440399 GGATTCATTATTGCCCAGGATTTGAGCAGTGGAAGCTGTGGGCATTGGAGCAAGAAGCAA 172440340 Query 65300 ACTATTTCT 65308 ||| || || Sbjct 172440339 ACTGTTCCT 172440331 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 65413 ATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG 65472 ||||| ||||||| |||||||| || || | || |||||||| || | || |||| Sbjct 172438160 ATCCTTCATATGTTTCGTATGGACCAAGCTCTTTGGCCAGTTCACAGCTAGATTCCAATG 172438101 Query 65473 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAA 65532 || | ||||||||||| || || || | ||||||| ||| || | | || |||| Sbjct 172438100 CAGCATAATAAATGGTCTCAAATATTTGTTTATTTAACATTTGAGCCTTCTCACTCTCAA 172438041 Query 65533 ATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTC 65592 |||| || | | ||| || || || ||||| | || || || ||||| || ||||| | Sbjct 172438040 ATGGGTATCTCATGAGGATGAAAGCATCTGCCAGGCCCTGCACCCCAATCCCAATAGGCC 172437981 Query 65593 TATGTCTCTTATTAGA 65608 || |||| || || Sbjct 172437980 GGTGCTTCTTGTTGGA 172437965 >seq12 Length=128359586 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||||| || | ||||||||||| |||||||| ||||| || || | || | Sbjct 109014789 CCTCATCTCTACTGATCAGCTCGTTGGAAAAGGTGAGTCCAGGCATGAGACCCCTTTTCT 109014848 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| || || | ||||| || ||||| ||||| |||||||||||||| ||||| | Sbjct 109014849 TTAGCCAGAAAATTGCAGCAAAGGACCCAGAGAAGAATATTCCTTCTACTGCAGCAAATG 109014908 Query 36300 CAATAAGTCTCTCTCC 36315 | | | ||| ||||| Sbjct 109014909 CCACGACTCTTTCTCC 109014924 >seq11 Length=155008753 Score = 105 bits (116), Expect = 9e-18 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 ||||||||||||| || | ||||||||||| |||||||| ||||| || || | || | Sbjct 132627298 CCTCGTCTCTACTGATCAGCTCGTTGGAAAAGGTGAGTCCAGGCATGAGACCCCTTTTCT 132627357 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| || || | ||||| || ||||| || || |||||||||||||| | ||| | Sbjct 132627358 TCAGCCAGAAAATTGCAGCAAAGGAGCCAGAGAAAAATATTCCTTCTACTGCGGAAAATG 132627417 Query 36300 CAATAAGTCTCTC 36312 | | | |||||| Sbjct 132627418 CCACCACTCTCTC 132627430 >seq10 Length=136570856 Score = 98.7 bits (108), Expect = 1e-15 Identities = 106/139 (76%), Gaps = 5/139 (4%) Strand=Plus/Minus Query 35812 TTAAAAATCAACATCTAGAGAAAAATGATTGTCTT----CTTGAGACATAACTCCCATTT 35867 ||| || ||| |||| || | |||| ||||||| |||| |||||||| ||||| | Sbjct 119053703 TTAGAAGTCAGCATCCAGTGTAAAAGTGTTGTCTTTTGCCTTG-GACATAACACCCATCT 119053645 Query 35868 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 35927 | |||||||| || || || || ||||| ||||| || ||||| ||||| || |||| Sbjct 119053644 TCTGGTATTCTCCAACTTTCTTCTCAAAAAAGTTAGTCTTTCCTTCCAATGAGATGTTTT 119053585 Query 35928 CCATGAAATCGAATGGATT 35946 ||||||| || |||||||| Sbjct 119053584 CCATGAAGTCAAATGGATT 119053566 Score = 89.7 bits (98), Expect = 7e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||||||||| || ||||| | ||| || |||||||| |||||||| || || || || Sbjct 119051263 ATCTTTAACATAGGTGTCAATAAGAAGGCTGTACATTTCTGAATGAATATTCTCCATTGC 119051204 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAA 36531 ||||| || || || || || | |||||| |||| || |||||| | | ||| Sbjct 119051203 AATTTGGAAGCCATAAAAGCAGCGAGCCTCTGTAACTTGCACTTCTTTGCTAAA 119051150 >seq9 Length=159361991 Score = 95.1 bits (104), Expect = 2e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 ||| |||| |||||| ||||||| |||||| |||||||| ||||||||||| || || || Sbjct 138038979 ATCCTTAATATATGTGTCAATCAGAAGACTGTACATTTCAGAATGAATGTTCTCCATTGC 138038920 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 36522 |||||||| || || || || | | ||||||| | || ||||| Sbjct 138038919 AATTTGAAAACCATAAAAGCAGCGAACCTCGGTTACTTGCACTTC 138038875 Score = 91.5 bits (100), Expect = 2e-13 Identities = 105/140 (75%), Gaps = 5/140 (4%) Strand=Plus/Minus Query 35811 TTTAAAAATCAACATCTAGAGAAAAATGATTGTCTT----CTTGAGACATAACTCCCATT 35866 ||||||| ||| ||| ||||| || ||||| || |||| | ||| || ||||| Sbjct 138044454 TTTAAAAGTCAGCATTTAGAGTGAATTGATTTTCCGTGGCCTTG-GCCATGACACCCATC 138044396 Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926 || ||||||||||| || || || || ||||| || || |||||||| || || ||| Sbjct 138044395 TTCTGGTATTCACCAACTTTCTTCTCAAAGAAATTGGTCTTTCCTTCTAAGGAGATGTTT 138044336 Query 35927 TCCATGAAATCGAATGGATT 35946 |||||||| || |||||||| Sbjct 138044335 TCCATGAAGTCAAATGGATT 138044316 >seq5 Length=144167370 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/131 (76%), Gaps = 6/131 (5%) Strand=Plus/Minus Query 9473 AAACAAT----CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAG 9528 ||||||| || ||||||| || ||||| |||||||||||||| | || |||| | Sbjct 49846680 AAACAATATACCCAGCTCCAAACTTGCTGAAGTCTCTCTTTGATTGAAATGTGAATGCTG 49846621 Query 9529 TCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGC-ACATCA 9587 |||| |||| ||||| || || ||||| || || ||||| | || || ||| |||||| Sbjct 49846620 TCAGCCCAAGGAACACAGCTGTTGTCAGTATAAAGGCTTGAAGGACCAC-TGCTACATCA 49846562 Query 9588 TAGAAAGTAAC 9598 ||||| ||||| Sbjct 49846561 TAGAATGTAAC 49846551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657283995223720