Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1 131 2e-25 seq3 107 2e-18 seq2 104 2e-17 seq4 86.0 6e-12 seq12 82.4 8e-11 >seq1 Length=219802468 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | ||||||||| | || || |||||||||||||| || || Sbjct 160684531 CCACCTCTGAGACGAAGAACTAAGTGCAAGGTGGATTCTTTTTGAATGTTGTAGTCAGAA 160684472 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| ||||| ||||||||| | |||| | |||||||| ||||| Sbjct 160684471 AGAGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAAATCAATCTCTGCTGATCAGGAGGA 160684412 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| ||||||| ||||| | ||| | |||||| | || || || Sbjct 160684411 ATGCCTTCTTTGTCTTGGATTTTTGCTTTTACATTTTCAATTGTGTCACTTGGTTCAACT 160684352 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | ||||| || || || || || || ||||| ||||| Sbjct 160684351 TCAAGGGTAATGGTCTTCCCAGTTAAGGTCTTGACAAATATCTGCAT 160684305 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | ||||||||| | || |||||||| |||||||| || || | Sbjct 160684075 CCACCTCTGAGACGAAGAACTAAGTGCAAGGTGGACTCTTTCTGAATGTTGTAGTCTGAC 160684016 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| ||||| ||||||||| | |||| | ||||| || || || Sbjct 160684015 AGGGTTCTGCCATCTTCCAGCTGCTTACCAGCAAAAATCAATCTCTGCTGGTCAGGGGGA 160683956 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| ||||||| |||| | || | ||||| | ||||||||| Sbjct 160683955 ATACCTTCTTTGTCTTGGATTTTTGCCTTTACATTCTCAATAGTGTCACTTGGCTCCACC 160683896 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | ||||| || |||| || || || ||||| ||||| Sbjct 160683895 TCAAGAGTAATTGTCTTCCCTGTCAGGGTCTTCACAAATATCTGCAT 160683849 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | ||||||||| | || |||||||| ||||| || || || | Sbjct 160684987 CCACCTCTCAGACGAAGAACTAAGTGCAAGGTTGACTCTTTCTGAATATTGTAGTCAGAC 160684928 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| || || ||||||||| | |||| | ||||| || || || Sbjct 160684927 AGGGTTCTGCCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGCTGGTCAGGGGGA 160684868 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| ||||||| ||||| | ||| | |||||| | || || || Sbjct 160684867 ATGCCTTCTTTGTCTTGGATTTTTGCTTTTACGTTTTCAATTGTGTCACTTGGTTCAACT 160684808 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | || || || || || || || || ||||||||||| Sbjct 160684807 TCAAGAGTAATTGTTTTACCAGTTAAGGTCTTGACAAATATTTGCAT 160684761 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | ||||||||| | || ||||||||||||||||| ||||| Sbjct 160685215 CCACCTCTGAGACGAAGAACTAAGTGCAAGGTGGACTCTTTTTGAATGTTGTAATCAGAA 160685156 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| ||||| || |||||| | |||| | || ||||| || || Sbjct 160685155 AGAGTGCGGCCATCTTCCAGCTGCTTCCCAGCAAAAATCAATCTCTGTTGATCAGGGGGA 160685096 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| ||||||| || | | || | ||||| | || || || Sbjct 160685095 ATGCCTTCTTTGTCTTGGATTTTTGCCTTAACATTCTCAATGGTGTCACTTGGTTCAACT 160685036 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| ||||||| ||||| || ||||| ||||| Sbjct 160685035 TCTAGAGTAATTGTCTTCCCGGTCAGTGTTTTCACAAATATCTGCAT 160684989 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||||| | ||| ||||| | || || || ||||||||||| ||||| | Sbjct 160683847 CCCCCTCTCAAACGGAGAACCAAGTGCAGAGTGGATTCCTTTTGAATGTTGTAATCTGAC 160683788 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | || || |||||||| ||||| |||||| | ||| || || || || Sbjct 160683787 AGGGTTCGTCCA-TCCTCCAGCTGTTTGCCAGCGAAGATCAACCTTTGTTGGTCAGGGGG 160683729 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||||||||| || |||||| ||| | | || | |||||| | ||||| || Sbjct 160683728 AATGCCTTCTTTATCTTGGATTTTAGCTTTCACATTCTCAATTGTGTCACTTGGCTCAAC 160683669 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | ||||| || || | ||||| || ||||| ||||| Sbjct 160683668 TTCAAGTGTGATGGTCTTCCCAGTGAGAGTTTTCACAAATATCTGCAT 160683621 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | ||| | || ||||| | ||||| || || ||||| ||||| || Sbjct 160684304 GCCACCTCTGAGACGAAGGACCAAGTGCAGAGTAGATTCCTTCTGAATATTATAGTCTGA 160684245 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || || ||||| | ||||| |||||| | |||| | || ||||| || || Sbjct 160684244 CAGGGTTCTTCCATCTTCCAATTGTTTGCCAGCAAATATCAATCTCTGTTGATCAGGGGG 160684185 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| |||||| |||| | || | ||||| | ||||| || Sbjct 160684184 AATGCCTTCCTTGTCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTTGGCTCAAC 160684125 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | ||||| || |||| || || || ||||||||||| Sbjct 160684124 TTCAAGAGTAATTGTCTTCCCTGTCAGGGTCTTCACAAATATTTGCAT 160684077 >seq3 Length=181146889 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||||||||| || || || || || | | |||| ||||| ||||| || || Sbjct 29378483 GTAGACTCTTTCTGGATATTGTAGTCACAAAGGGTGCGACCATCTTCCAGCTGCTTGCCG 29378542 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 ||| |||||| | ||| || || ||||| |||||||||||||| ||| | |||| ||| Sbjct 29378543 GCAAAGATCAACCTTTGTTGGTCTGGAGGAATGCCTTCTTTGTC-TTGAATCTTTGATTT 29378601 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | ||| | ||||| | | ||| ||||| | ||| | |||||||| ||||| || Sbjct 29378602 CACATTTTCTATGGTGTCACTTGACTCTACCTCCAGGGTAATGGTCTTGCCAGTCAAAGT 29378661 Query 139747 TTTTACGAATATTTGCAT 139764 |||||| || || ||||| Sbjct 29378662 TTTTACAAAGATCTGCAT 29378679 Score = 104 bits (114), Expect = 2e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || |||||| |||||| | || || || ||||| ||||||||||| Sbjct 29377102 TCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGTTGGTCTGGAGGAATGCCTTCTTTA 29377161 Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | |||| ||| | | ||| | ||||| | ||||| ||||| | ||| | Sbjct 29377162 TC-TTGAATCTTTGATTTCACGTTTTCTATGGTGTCACTTGGCTCTACCTCTAGGGTAAT 29377220 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| ||||| ||||||||||| || ||||| Sbjct 29377221 GGTCTTGCCAGTCAAAGTTTTTACGAAGATCTGCAT 29377256 Score = 96.9 bits (106), Expect = 3e-15 Identities = 117/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| |||||| | || || || ||||| |||||||||||| Sbjct 29378753 TCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGTTGGTCTGGAGGAATGCCTTCTTTG 29378812 Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | |||| ||| | | ||| | ||||| | ||||| ||||| | ||| | Sbjct 29378813 TC-TTGAATCTTTGATTTCACGTTTTCTATGGTGTCACTTGGCTCTACCTCCAGGGTAAT 29378871 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||||||| |||| |||||||| || || |||||| Sbjct 29378872 GGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATA 29378908 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || || || || || || || ||||| | | |||| | ||||| ||||| Sbjct 29378933 TGAAGGGTGGATTCCTTCTGGATATTGTAATCACAGAGGGTGCGCCCATCTTCCAGCTGC 29378992 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || ||| |||||| | ||||| || ||||| |||||||||||||| ||| ||| Sbjct 29378993 TTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGGATCTTT 29379052 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 ||| | | || | ||||| | ||||| ||||| | ||| | |||||||| ||| Sbjct 29379053 GCTTTGACATTCTCAATAGTGTCACTTGGCTCTACCTCCAGGGTAATGGTCTTGCCAGTC 29379112 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | ||||| || || || ||||| Sbjct 29379113 AGGGTTTTCACAAAGATCTGCAT 29379135 >seq2 Length=179946965 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | || ||||| | || || || || ||||| || || || | Sbjct 133020361 CCACCTCTGAGACGAAGGACCAAGTGCAGAGTGGATTCCTTCTGAATATTGTAGTCAGAC 133020302 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || ||||| || || ||||||||| | || | | ||||| || || || Sbjct 133020301 AGTGTTCTGCCATCTTCCAGTTGCTTACCAGCAAAAATTAATCTCTGCTGGTCAGGGGGA 133020242 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| |||||| ||||| | ||| | |||||| | || || ||| Sbjct 133020241 ATGCCTTCTTTGTCTTGGATTTTGGCTTTTACATTTTCAATTGTGTCACTTGGTTCAACC 133020182 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | ||||| || || || || || || ||||||||||| Sbjct 133020181 TCAAGGGTAATTGTCTTCCCAGTTAATGTCTTGACAAATATTTGCAT 133020135 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | ||||||||| | || || ||||| || |||||||| || | Sbjct 133020133 CCACCTCTCAGACGGAGAACTAAGTGCAAGGTGGATTCTTTCTGGATGTTATAGTCTGAC 133020074 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| || || || |||||| | |||| | ||||| || || || Sbjct 133020073 AGGGTTCGGCCATCTTCCAGTTGCTTGCCAGCAAAAATCAATCTCTGCTGGTCAGGGGGA 133020014 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || |||||||| || ||| |||||| ||| | | ||| | |||||| | ||||| || Sbjct 133020013 ATACCTTCTTTATCC-TGAATTTTTGCCTTAACATTTTCAATTGTGTCACTTGGCTCAAC 133019955 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | || || || || || || || || ||||||||||| Sbjct 133019954 TTCAAGGGTAATGGTTTTACCAGTTAAGGTCTTGACAAATATTTGCAT 133019907 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| ||||| | ||| ||||| | || || || |||||||||||||| || Sbjct 133019222 GCCACCTCTCAAACGGAGAACCAAGTGCAGAGTGGATTCCTTTTGAATGTTATAGTCTGA 133019163 Query 139597 CATTGTGCTCGAG--TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 || || |||| ||||| |||||||| |||||| | |||| | ||| || || ||| Sbjct 133019162 CAGGGT--TCGACCATCTTCCAGCTGTTTGCCAGCAAAAATCAACCTTTGTTGGTCTGGA 133019105 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 || ||||||||||| || ||| |||| | || | | || | || || | ||||| Sbjct 133019104 GGAATGCCTTCTTTATC-CTGAATTTTAGCCTTCACATTCTCAATAGTATCACTTGGCTC 133019046 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | || | ||||| || || | ||||| || ||||| ||||| Sbjct 133019045 AACTTCTAGTGTGATGGTCTTCCCAGTGAGAGTTTTCACAAATATCTGCAT 133018995 >seq4 Length=159726490 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| |||||| | ||||| || ||||| || ||||||||| Sbjct 6847622 TCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTG 6847563 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| ||| ||| | | || | ||||| | ||||| ||||| | ||| | Sbjct 6847562 TCTTGGATCTTTGCTTTGACATTCTCAATAGTGTCACTTGGCTCTACCTCTAGGGTAATG 6847503 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| |||| ||||| || || || ||||| Sbjct 6847502 GTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 6847468 >seq12 Length=128359586 Score = 82.4 bits (90), Expect = 8e-11 Identities = 149/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 139551 GCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCAT--TGTGCTCGA 139608 |||| |||| ||| | || |||||||| || |||||||| || | |||| || Sbjct 101402845 GCAACACTAGGTGCAATGTGGACTCTTTCTGGATGTTATAGTCATATAGAGTGTGTTCA- 101402787 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||||| ||||||||||||||| ||| ||||| ||||| || || || || ||||| || Sbjct 101402786 -TCTTCAAGCTGTTTACCAGCAAAGAGCAGACACTGCTGGTCAGGGGGAATACCTTCCTT 101402728 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || |||||| || | | ||| | || || ||| | |||||| ||| | Sbjct 101402727 ATCCTGGATTTTAGCCTTCACATTTTCAATGGTATCACTGGATTTACCCTCAAGGGTGAT 101402668 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | || | |||||||| || |||||||| Sbjct 101402667 TGTTTTCCAAGTAAGGGTTTTTACAAAGATTTGCAT 101402632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495394108973600