Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4 129 8e-25 seq3 129 8e-25 seq12 123 4e-23 seq11 118 2e-21 seq10 109 8e-19 seq9 100 4e-16 >seq4 Length=159726490 Score = 129 bits (142), Expect = 8e-25 Identities = 117/145 (81%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 79929 ATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTC 79987 || || || ||| ||||||||||||||||| || ||||| | || ||| |||||||| | Sbjct 158380747 ATTATTCTCTACACGTTTCATAAAGAGATCCGGTATCCACATGGC-ATAGAATAGATCCC 158380805 Query 79988 TGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 80047 ||| ||| |||||||| ||||| ||||||||||| || || ||||| | | | |||| Sbjct 158380806 TGGCTCTCTGCTCCTCCTTTCCAGTATTCTTTTTTAGGTCCAGGAATTCAAACACATCAT 158380865 Query 80048 AATGCCACGGTTCCAAGTATATGGC 80072 ||||||| ||||||| ||||||||| Sbjct 158380866 AATGCCAAGGTTCCAGGTATATGGC 158380890 Score = 102 bits (112), Expect = 1e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118 ||| || || || ||||| | ||||| || ||||| ||||| ||||||||||| || | Sbjct 158378022 TACCTGGAACTCGCCAGAAAGGACTCTGCGTGTGTATATATTGCTGGTATATGGCTCAAT 158378081 Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAA 79178 ||||||||||| |||| ||||||||||| || || || |||||||| |||| | || Sbjct 158378082 AGATTCATTATTGCCCAGGATTTGAGCAGTGGAAGCAGTGGGCATAGGAGCCAGAAGCAA 158378141 Query 79179 ACTATTTCT 79187 ||| || || Sbjct 158378142 ACTGTTCCT 158378150 Score = 96.9 bits (106), Expect = 5e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 79669 ATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 79728 || || ||||| |||||||| || |||||||| || | || || ||||| ||||| | Sbjct 158379692 ATCTCTGTGCACAGGTTACTGCATTTAATGGTGCCCAGGTTCTGCTGATTGCTCTTGCGG 158379751 Query 79729 TTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATC 79788 || || ||||||||||| || || | ||||| ||||| ||| |||| || |||||||| Sbjct 158379752 TTGCAGGCATCCTTATAGAGCATATAGGGAGTGCCAGTCTCAGTCTGTGACTCTATAATG 158379811 Query 79789 GCTTTCCAGAC 79799 || | ||| || Sbjct 158379812 GCATACCATAC 158379822 Score = 87.8 bits (96), Expect = 3e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || || ||||| || | ||||||||||| ||||| ||||||||||| |||| |||||| Sbjct 158382226 GTACCAGCATTGAACAGTGTAGGAGAAGCATGCGTGAACCATTTTTCTGACAACAGATTG 158382285 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || || || ||||| | || ||||| || ||| || || || | || | ||| | | Sbjct 158382286 TAGGTTTCGATAGCAGCATCAATATCAGTTTTATGTATACCAACAGATACCCTCATCAGC 158382345 Query 80455 ATGTGCTGAGGTCTTTCA 80472 ||||| || || | |||| Sbjct 158382346 ATGTGTTGTGGCCGTTCA 158382363 >seq3 Length=181146889 Score = 129 bits (142), Expect = 8e-25 Identities = 117/145 (81%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 79929 ATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTC 79987 || || || ||| |||||||||||||||||||| ||||| | || ||| |||||||| | Sbjct 172428936 ATTATTCTCTACACGTTTCATAAAGAGATCAGGTATCCACATGGC-ATAGAATAGATCCC 172428878 Query 79988 TGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 80047 ||| ||| |||||||| ||||| || |||||||| || || ||||| | | | |||| Sbjct 172428877 TGGCTCTCTGCTCCTCCTTTCCAGTGTTCTTTTTTAGGTCCAGGAAATCAAACACATCAT 172428818 Query 80048 AATGCCACGGTTCCAAGTATATGGC 80072 ||||||||||||||| |||||||| Sbjct 172428817 AATGCCACGGTTCCAGATATATGGC 172428793 Score = 111 bits (122), Expect = 2e-19 Identities = 129/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 |||||||| ||| |||||||||||||| || || || || |||| | || || | || Sbjct 172424806 CACTAAATGTTTTCTTTGTTTCCTTGTGCAGGTTGGAAACAGCTACGCGAGCAGCCAGAA 172424747 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 |||||||||||||||||| || || |||||||| | || ||||| || ||||||| Sbjct 172424746 TGGCATAATCTGGATGTTTAGTTGTCAGGGTGGCTGCCGTCTCCGCTGCAAGTGTGTCCA 172424687 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 80851 |||| ||||| || ||| | || | || || || || ||||||| |||| Sbjct 172424686 GCTCTATAGTTGTGACCCCACTGTAAAGACCCTGTATTACTTTCATAGTAATTT 172424633 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118 ||| || || |||||||| | ||||| || ||||| ||||| ||||||||||| || | Sbjct 172440459 TACCTGGAACTCTCCAGAGAGGACTCTGCGTGTGTATATATTGCTGGTATATGGCTCAAT 172440400 Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAA 79178 ||||||||||| |||| ||||||||||| || || || ||||| || || | | || Sbjct 172440399 GGATTCATTATTGCCCAGGATTTGAGCAGTGGAAGCTGTGGGCATTGGAGCAAGAAGCAA 172440340 Query 79179 ACTATTTCT 79187 ||| || || Sbjct 172440339 ACTGTTCCT 172440331 Score = 87.8 bits (96), Expect = 3e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || || ||||| || | || |||||||| || || |||||||||||||||| |||||| Sbjct 172427172 GTACCAGCATTGAACAGTGTGGGAGAAGCATGTGTGAACCATTTTTCAGACAACAGATTG 172427113 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || || |||||||||| || || || || ||| || || || | || | ||| | | Sbjct 172427112 TAGGTTTCAATAGCTGCATCAATGTCAGTTTTATGGATGCCAACGGATACCCTCATCAGC 172427053 Query 80455 ATGTGCTGAGGTC 80467 ||||| || |||| Sbjct 172427052 ATGTGTTGTGGTC 172427040 >seq12 Length=128359586 Score = 123 bits (136), Expect = 4e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| |||||||| || || ||||||||||| |||||||| ||||| || || | || | Sbjct 109014789 CCTCATCTCTACTGATCAGCTCGTTGGAAAAGGTGAGTCCAGGCATGAGACCCCTTTTCT 109014848 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || || | ||||| |||||||| ||||| |||||||||||||| ||||| | Sbjct 109014849 TTAGCCAGAAAATTGCAGCAAAGGACCCAGAGAAGAATATTCCTTCTACTGCAGCAAATG 109014908 Query 50102 CAACAAGTCTCTCTCC 50117 | || | ||| ||||| Sbjct 109014909 CCACGACTCTTTCTCC 109014924 >seq11 Length=155008753 Score = 118 bits (130), Expect = 2e-21 Identities = 106/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 ||||||||||||| || || ||||||||||| |||||||| ||||| || || | || | Sbjct 132627298 CCTCGTCTCTACTGATCAGCTCGTTGGAAAAGGTGAGTCCAGGCATGAGACCCCTTTTCT 132627357 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || || | ||||| || ||||| || || |||||||||||||||| ||| | Sbjct 132627358 TCAGCCAGAAAATTGCAGCAAAGGAGCCAGAGAAAAATATTCCTTCTACTGCGGAAAATG 132627417 Query 50102 CAACAAGTCTCTC 50114 | || | |||||| Sbjct 132627418 CCACCACTCTCTC 132627430 >seq10 Length=136570856 Score = 109 bits (120), Expect = 8e-19 Identities = 117/153 (76%), Gaps = 5/153 (3%) Strand=Plus/Minus Query 49614 TTAAAAGTCAACATCTAGAGAAAAATGATTATCTT----CTTGAGACATAACTCCCATTT 49669 ||| |||||| |||| || | |||| || |||| |||| |||||||| ||||| | Sbjct 119053703 TTAGAAGTCAGCATCCAGTGTAAAAGTGTTGTCTTTTGCCTTG-GACATAACACCCATCT 119053645 Query 49670 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 49729 | |||||||| || || || || ||||| ||||| |||||||||||||| || |||| Sbjct 119053644 TCTGGTATTCTCCAACTTTCTTCTCAAAAAAGTTAGTCTTTCCTTCCAATGAGATGTTTT 119053585 Query 49730 CCATGAAATCAAACGGATTGGTAACATTATAAA 49762 ||||||| ||||| ||||| || | ||| ||| Sbjct 119053584 CCATGAAGTCAAATGGATTTGTGGCCTTAAAAA 119053552 Score = 96.9 bits (106), Expect = 5e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516 ||| || || | ||||| ||||| || ||||| || || ||||| | |||||||||||| Sbjct 119050097 TACCTCCTCAGCAGTCCAGAATGAAGCTTCTGCTTTCTTGTACATTTGCCAGATGTCATG 119050038 Query 50517 ATATTGGATTGGGAAAATAACAAATCTATTTGGATT 50552 ||||||||| ||||| || |||||||||| |||||| Sbjct 119050037 ATATTGGATGGGGAAGATCACAAATCTATGTGGATT 119050002 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||||||||| || || || | ||| || |||||||| |||||||| || || || || Sbjct 119051263 ATCTTTAACATAGGTGTCAATAAGAAGGCTGTACATTTCTGAATGAATATTCTCCATTGC 119051204 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAA 50333 || || || || || || || | |||||| |||| ||||||||| | | ||| Sbjct 119051203 AATTTGGAAGCCATAAAAGCAGCGAGCCTCTGTAACTTGCACTTCTTTGCTAAA 119051150 >seq9 Length=159361991 Score = 100 bits (110), Expect = 4e-16 Identities = 106/139 (76%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 49613 TTTAAAAGTCAACATCTAGAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTT 49669 ||||||||||| | || || | ||| ||||||| | | ||||| || ||||| | Sbjct 138029415 TTTAAAAGTCAGCGTCCAGTGTGAAAGTGTTATCTTTTGGCTTTGACATGACACCCATCT 138029356 Query 49670 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 49729 | ||||||||||| || | || || || || ||||| ||||||||||| || || |||| Sbjct 138029355 TCTGGTATTCACCAACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAAAGAGATGTTTT 138029296 Query 49730 CCATGAAATCAAACGGATT 49748 ||||||| ||||| ||||| Sbjct 138029295 CCATGAAGTCAAATGGATT 138029277 Score = 96.9 bits (106), Expect = 5e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516 ||| ||||| | ||||| ||||| || ||||| || || ||||| | |||||||||||| Sbjct 138025045 TACCTCTTCAGCAGTCCAGAATGAAGCTTCTGCTTTCTTGTACATTTGCCAGATGTCATG 138024986 Query 50517 ATATTGGATTGGGAAAATAACAAATCTATTTGGATT 50552 ||| ||||| ||||| || |||||||||| |||||| Sbjct 138024985 ATACTGGATGGGGAAGATCACAAATCTATGTGGATT 138024950 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/140 (76%), Gaps = 5/140 (4%) Strand=Plus/Minus Query 49613 TTTAAAAGTCAACATCTAGAGAAAAATGATTATCTT----CTTGAGACATAACTCCCATT 49668 ||||||||||| ||| ||||| || ||||| || |||| | ||| || ||||| Sbjct 138044454 TTTAAAAGTCAGCATTTAGAGTGAATTGATTTTCCGTGGCCTTG-GCCATGACACCCATC 138044396 Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 || ||||||||||| || || || || ||||| || |||||||| || || || ||| Sbjct 138044395 TTCTGGTATTCACCAACTTTCTTCTCAAAGAAATTGGTCTTTCCTTCTAAGGAGATGTTT 138044336 Query 49729 TCCATGAAATCAAACGGATT 49748 |||||||| ||||| ||||| Sbjct 138044335 TCCATGAAGTCAAATGGATT 138044316 Score = 86.0 bits (94), Expect = 9e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 ||| |||| ||| || || |||| |||||| |||||||| ||||||||||| || || || Sbjct 138038979 ATCCTTAATATATGTGTCAATCAGAAGACTGTACATTTCAGAATGAATGTTCTCCATTGC 138038920 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 50324 || ||||| || || || || | | ||||||| | |||||||| Sbjct 138038919 AATTTGAAAACCATAAAAGCAGCGAACCTCGGTTACTTGCACTTC 138038875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717298840834120